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BaseInfo

ncRNA ID	gma-miR169l-3p
Species	Glycine max
Class	miRNA
Genome position	chr14:5324798-5324911 [+]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	84 - CGGGCAAGUUGUUUUUGGCUAC - 105
Stem-loop(if miRNA)	UGAUU  C         UG       G   ------U    AUAUAUGCAUUAGGU GAG     UG AGCCAAGAA  ACUUGCC GAA       GCAU               A |||     || |||||||||  ||||||| |||       |||| CUC     AC UCGGUUUUU  UGAACGG CUU       UUAU               C    UAUUU  A         GU       G   UAAUAUG    GUUGAUAUAUACAAC
Stem-loop sequence	GAGUGAUUUGCAGCCAAGAAUGACUUGCCGGAAUGCAUAUAUAUGCAUUAGGUACCAACAUAUAUAGUUGUAUUGUAUAAUUUCGGGCAAGUUGUUUUUGGCUACAUUUAUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006578615.2	ncRNA:22   CAUCGGUUUUUGUUGAACGGGC   1   **||=|||||||||||*||||| targets:290   CGAGUCAAAAACAACUGGCCCG   311 Target Full Sequence	2.5	PREDICTED: Glycine max DNA-(apurinic or apyrimidinic site) lyase (LOC100817167), transcript variant X2, mRNA	DNA-(apurinic or apyrimidinic site) lyase(LOC100817167)	coding protein	psRNATarget
XM_003523078.3	ncRNA:22   CAUCGGUUUUUGUUGAACGGGC   1   **||=|||||||||||*||||| targets:290   CGAGUCAAAAACAACUGGCCCG   311 Target Full Sequence	2.5	PREDICTED: Glycine max DNA-(apurinic or apyrimidinic site) lyase (LOC100817167), transcript variant X1, mRNA	DNA-(apurinic or apyrimidinic site) lyase(LOC100817167)	coding protein	psRNATarget
XM_003521048.3	ncRNA:22   CAUCGGUUUUUGUUGAACGGGC   1   **||*|||||=||||||||||| targets:1122   UCAGACAAAAGCAACUUGCCCG   1143 Target Full Sequence	2.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase At4g11680-like (LOC100806994), transcript variant X1, mRNA	E3 ubiquitin-protein ligase At4g11680-like(LOC100806994)	coding protein	psRNATarget
XM_014764856.1	ncRNA:22   CAUCGGUUUUUGUUGAACGGGC   1   **|||||||||||||||*|||* targets:305   AAAGCCAAAAACAACUUCCCCU   326 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor 9-like (LOC100775465), mRNA	ethylene-responsive transcription factor 9-like(LOC100775465)	coding protein	psRNATarget

Reference

1	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).