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BaseInfo

ncRNA ID	gma-miR169l-5p
Species	Glycine max
Class	miRNA
Genome position	chr14:5324798-5324911 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - CAGCCAAGAAUGACUUGCCGG - 31
Stem-loop(if miRNA)	UGAUU  C         UG       G   ------U    AUAUAUGCAUUAGGU GAG     UG AGCCAAGAA  ACUUGCC GAA       GCAU               A |||     || |||||||||  ||||||| |||       |||| CUC     AC UCGGUUUUU  UGAACGG CUU       UUAU               C    UAUUU  A         GU       G   UAAUAUG    GUUGAUAUAUACAAC
Stem-loop sequence	GAGUGAUUUGCAGCCAAGAAUGACUUGCCGGAAUGCAUAUAUAUGCAUUAGGUACCAACAUAUAUAGUUGUAUUGUAUAAUUUCGGGCAAGUUGUUUUUGGCUACAUUUAUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014767062.1	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1367   GCGGCAAAUCAUUCUUGGCUG   1387 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9 (LOC100815617), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-9(LOC100815617)	coding protein	psRNATarget
XM_006575664.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1349   GCGGCAAAUCAUUCUUGGCUG   1369 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget
AK244862.1	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1438   GCGGCAAAUCAUUCUUGGCUG   1458 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-15-I08	NA	coding protein	psRNATarget
XM_006575660.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1406   GCGGCAAAUCAUUCUUGGCUG   1426 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget
XM_006575663.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1409   GCGGCAAAUCAUUCUUGGCUG   1429 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget
XM_003544477.3	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1530   GCGGCAAAUCAUUCUUGGCUG   1550 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9 (LOC100815617), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-9(LOC100815617)	coding protein	psRNATarget
XM_006575661.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||| targets:1490   GCGGCAAAUCAUUCUUGGCUG   1510 Target Full Sequence	1.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-9-like (LOC102664020), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-9-like(LOC102664020)	coding protein	psRNATarget
XM_003532156.3	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||* targets:1282   GCGGCAAAUCAUUCUUGGCUU   1302 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100783581), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100783581)	coding protein	psRNATarget
XM_006586118.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||* targets:1289   GCGGCAAAUCAUUCUUGGCUU   1309 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100783581), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100783581)	coding protein	psRNATarget
XM_003551307.3	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||* targets:1355   GCGGCAAAUCAUUCUUGGCUU   1375 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100808378), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100808378)	coding protein	psRNATarget
XM_014771032.1	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *||||||*||||||||||||* targets:1457   GCGGCAAAUCAUUCUUGGCUU   1477 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1-like (LOC100808378), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-1-like(LOC100808378)	coding protein	psRNATarget
NM_001255884.2	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   **|||||*||||||||||||* targets:1144   AAGGCAAUUCAUUCUUGGCUU   1164 Target Full Sequence	2.0	Glycine max nuclear transcription factor Y subunit A-9-like (LOC100789738), mRNA	nuclear transcription factor Y subunit A-9-like(LOC100789738)	coding protein	psRNATarget
BT097664.1	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   **|||||*||||||||||||* targets:1146   AAGGCAAUUCAUUCUUGGCUU   1166 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-22I24 unknown mRNA	NA	coding protein	psRNATarget
XM_003540477.3	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   **|||||*||||||||||||* targets:1163   AAGGCAAUUCAUUCUUGGCUU   1183 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-1 (LOC100782085), mRNA	nuclear transcription factor Y subunit A-1(LOC100782085)	coding protein	psRNATarget
XM_003520930.3	ncRNA:21   GGCCGUUCAGUAAGAACCGAC   1   *=|*=||*||||||||||||| targets:488   AUGAUAACUCAUUCUUGGCUG   508 Target Full Sequence	3.0	PREDICTED: Glycine max agamous-like MADS-box protein AGL80 (LOC100787546), mRNA	agamous-like MADS-box protein AGL80(LOC100787546)	coding protein	psRNATarget

Reference

1	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).