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BaseInfo

ncRNA ID gma-miR396c
Species Glycine max
Class miRNA
Genome position chr13:43804777-43804893 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 21 - UUCCACAGCUUUCUUGAACUU - 41
Stem-loop(if miRNA) CAAC        ------U    C         GC              U     UAGUG  A
    AAGUCCUG       UAUG UUUUCCACA  UUUCUUGAACUUCU AUGCC     CA U
    ||||||||       |||| |||||||||  |||||||||||||| |||||     || U
    UUCAGGAU       GUAC AAAAGGUGU  AAAGAAUUUGAAGA UACGG     GU A
----        CUAAACU    A         AA              -     -UGUA  U
Stem-loop sequence CAACAAGUCCUGUUAUGCUUUUCCACAGCUUUCUUGAACUUCUUAUGCCUAGUGCAAUUAUUGAUGUGGCAUAGAAGUUUAAGAAAAAUGUGGAAAAACAUGUCAAAUCUAGGACUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006574464.2
ncRNA:21   UUCAAGUUCUUUCGACACCUU   1
  ==|*||||||||||*||||||
targets:1147   GGGAUCAAGAAAGCAGUGGAA   1167

2.5 PREDICTED: Glycine max long chain acyl-CoA synthetase 1-like (LOC100816578), transcript variant X1, mRNA long chain acyl-CoA synthetase 1-like(LOC100816578) coding protein psRNATarget
XM_003533411.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:539   CCGUUCAAGAAAGCCUGUGGAA   560

3.0 PREDICTED: Glycine max growth-regulating factor 4-like (LOC100777524), mRNA growth-regulating factor 4-like(LOC100777524) coding protein psRNATarget
XM_003516444.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:549   CCGUUCAAGAAAGCCUGUGGAA   570

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100809947), mRNA growth-regulating factor 3-like(LOC100809947) coding protein psRNATarget
XM_006578811.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1113   CCGUUCAAGAAAGCCUGUGGAA   1134

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100803096), transcript variant X1, mRNA growth-regulating factor 7-like(LOC100803096) coding protein psRNATarget
XM_006595936.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1138   UCGUUCAAGAAAGCCUGUGGAA   1159

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100807080), mRNA growth-regulating factor 1-like(LOC100807080) coding protein psRNATarget
XM_003522484.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1113   CCGUUCAAGAAAGCCUGUGGAA   1134

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100803096), transcript variant X2, mRNA growth-regulating factor 7-like(LOC100803096) coding protein psRNATarget
XM_014773156.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:891   UCGUUCAAGAAAGCCUGUGGAA   912

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100807610), transcript variant X2, mRNA growth-regulating factor 1-like(LOC100807610) coding protein psRNATarget
XM_003549320.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1146   UCGUUCAAGAAAGCCUGUGGAA   1167

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100819396), mRNA growth-regulating factor 1-like(LOC100819396) coding protein psRNATarget
XM_006581609.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1100   CCGUUCAAGAAAGCCUGUGGAA   1121

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100796948), transcript variant X2, mRNA growth-regulating factor 7-like(LOC100796948) coding protein psRNATarget
XM_003526701.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1102   CCGUUCAAGAAAGCCUGUGGAA   1123

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100796948), transcript variant X1, mRNA growth-regulating factor 7-like(LOC100796948) coding protein psRNATarget
XM_014773155.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1107   UCGUUCAAGAAAGCCUGUGGAA   1128

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100807610), transcript variant X1, mRNA growth-regulating factor 1-like(LOC100807610) coding protein psRNATarget
XM_003549319.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1135   UCGUUCAAGAAAGCCUGUGGAA   1156

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100818860), mRNA growth-regulating factor 1-like(LOC100818860) coding protein psRNATarget

Reference

1 PMID:19084500
"Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules";
Wang Y, Li P, Cao X, Wang X, Zhang A, Li X;
Biochem Biophys Res Commun. 378:799-803(2009).
2 PMID:21504877
"MicroRNAs in the shoot apical meristem of soybean";
Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL;
J Exp Bot. 62:2495-2506(2011).
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