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BaseInfo

ncRNA ID gma-miR172l
Species Glycine max
Class miRNA
Genome position chr13:41635468-41635645 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 148 - GGAAUCUUGAUGAUGCUGCAU - 168
Stem-loop(if miRNA) CAGUC   A         G           A   UGC    UCAGC        C  GACUGUA     UUAUACA    - AUAUAUACAUGU
     UGC GGUGCAGCG CAUCAAGAUUC CAC   CUAA     UAGGACUU AU       CACGC       UACA U            A
     ||| ||||||||| ||||||||||| |||   ||||     |||||||| ||       |||||       |||| |
     ACG CUACGUCGU GUAGUUCUAAG GUG   GAUU     AUCUUGAA UA       GUGUG       GCAG U            C
CAUAA   A         A           G   -UA    ---UU        A  -AGUAAG     ------A    G GUUUCUCGGUUG
Stem-loop sequence CAGUCUGCAGGUGCAGCGGCAUCAAGAUUCACACUGCCUAAUCAGCUAGGACUUCAUGACUGUACACGCUUAUACAUACAUAUAUAUACAUGUACGUUGGCUCUUUGUGGACGAGUGUGGAAUGAAUAAAGUUCUAUUUUAGAUGUGGGAAUCUUGAUGAUGCUGCAUCAGCAAAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003520593.3
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1545   CUGCAGCAUCAUCAGGAUUCC   1565

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100808212), mRNA floral homeotic protein APETALA 2-like(LOC100808212) coding protein psRNATarget
XM_006573580.2
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1814   CUGCAGCAUCAUCAGGAUUCC   1834

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X3, mRNA floral homeotic protein APETALA 2-like(LOC100801975) coding protein psRNATarget
XM_014763839.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1820   CUGCAGCAUCAUCAGGAUUCC   1840

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100786333), mRNA floral homeotic protein APETALA 2-like(LOC100786333) coding protein psRNATarget
XM_003517264.3
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1822   CUGCAGCAUCAUCAGGAUUCC   1842

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC100801975) coding protein psRNATarget
XM_006573579.2
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1829   CUGCAGCAUCAUCAGGAUUCC   1849

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC100801975) coding protein psRNATarget
XM_014772192.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:2031   CUGCAGCAUCAUCAGGAUUCC   2051

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC100797238) coding protein psRNATarget
XM_003554309.3
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:2050   CUGCAGCAUCAUCAGGAUUCC   2070

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC100797238) coding protein psRNATarget
XM_003550003.3
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||||*||||
targets:1969   CUGCAGCAUCAUCAAGUUUCC   1989

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC100792442) coding protein psRNATarget
XM_006600875.2
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||||*||||
targets:1972   CUGCAGCAUCAUCAAGUUUCC   1992

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC100792442) coding protein psRNATarget
XM_006579822.2
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||||*||||
targets:1971   CUGCAGCAUCAUCAAGUUUCC   1991

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X4, mRNA floral homeotic protein APETALA 2-like(LOC100794096) coding protein psRNATarget
XM_003524595.3
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||||*||||
targets:1975   CUGCAGCAUCAUCAAGUUUCC   1995

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X3, mRNA floral homeotic protein APETALA 2-like(LOC100794096) coding protein psRNATarget
XM_014775567.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||||*||||
targets:1990   CUGCAGCAUCAUCAAGUUUCC   2010

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC100794096) coding protein psRNATarget
XM_014775566.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||||*||||
targets:1994   CUGCAGCAUCAUCAAGUUUCC   2014

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC100794096) coding protein psRNATarget
JA894828.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  |||=||||||||||||||||*
targets:21   AUGUAGCAUCAUCAAGAUUCA   41

2.0 Sequence 145 from Patent WO2011067745 NA coding protein psRNATarget
KT031071.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||*
targets:1178   AUGCAGCAUCAUCAGGAUUCG   1198

2.5 Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds NA coding protein psRNATarget
XM_014765905.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||*
targets:1398   AUGCAGCAUCAUCAGGAUUCG   1418

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X5, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100776138) coding protein psRNATarget
XM_014765903.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||*
targets:1475   AUGCAGCAUCAUCAGGAUUCG   1495

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X4, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100776138) coding protein psRNATarget
XM_014765900.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||*
targets:1535   AUGCAGCAUCAUCAGGAUUCG   1555

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X2, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100776138) coding protein psRNATarget
XM_014765901.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||*
targets:1590   AUGCAGCAUCAUCAGGAUUCG   1610

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X3, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100776138) coding protein psRNATarget
XM_003519962.3
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||*
targets:1650   AUGCAGCAUCAUCAGGAUUCG   1670

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X1, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100776138) coding protein psRNATarget
XM_003535131.3
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||*
targets:1643   AUGCAGCAUCAUCAGGAUUCG   1663

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100783626), mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100783626) coding protein psRNATarget
KT031086.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1310   CUGCAGCAUCAUCAGGAUUCU   1330

2.5 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds NA coding protein psRNATarget
XM_006597244.2
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1749   CUGCAGCAUCAUCAGGAUUCU   1769

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7(LOC100796271) coding protein psRNATarget
XM_003546994.3
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1798   CUGCAGCAUCAUCAGGAUUCU   1818

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7(LOC100796271) coding protein psRNATarget
XM_003540705.3
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1764   CUGCAGCAUCAUCAGGAUUCU   1784

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X4, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100788303) coding protein psRNATarget
XM_006592181.2
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1768   CUGCAGCAUCAUCAGGAUUCU   1788

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X3, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100788303) coding protein psRNATarget
XM_006592180.2
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1810   CUGCAGCAUCAUCAGGAUUCU   1830

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100788303) coding protein psRNATarget
XM_006592179.2
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1813   CUGCAGCAUCAUCAGGAUUCU   1833

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100788303) coding protein psRNATarget
XM_006594938.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1855   CUGCAGCAUCAUCAGGAUUCU   1875

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X3, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100777102) coding protein psRNATarget
XM_003541960.2
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1901   CUGCAGCAUCAUCAGGAUUCU   1921

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100777102) coding protein psRNATarget
XM_006594937.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:2016   CUGCAGCAUCAUCAGGAUUCU   2036

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100777102) coding protein psRNATarget
XM_014776735.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  |||=|*|*|||||||||||||
targets:1851   AUGUAUCUUCAUCAAGAUUCC   1871

3.0 PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100802962), transcript variant X2, mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100802962) coding protein psRNATarget
XM_006582156.2
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  |||=|*|*|||||||||||||
targets:1945   AUGUAUCUUCAUCAAGAUUCC   1965

3.0 PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100802962), transcript variant X1, mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100802962) coding protein psRNATarget
XM_014776734.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *||=|*|*|||||||||||||
targets:1968   UUGUACCUUCAUCAAGAUUCC   1988

3.0 PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100807748), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100807748) coding protein psRNATarget

Reference

1 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).
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