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BaseInfo

ncRNA ID	gma-miR4376a-3p
Species	Glycine max
Class	miRNA
Genome position	chr13:40845925-40846034 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	82 - AGCAUCAUAUCUCCUGCAUAG - 102
Stem-loop(if miRNA)	C        G    C    U ---      A CCAU    G   C AAGGUUUGCUA GCAGGAGA AUGA GCUG C   CCUUGC C    CCUA CUU C ||||||||||| |||||||| |||| |||| |   |||||| |    |||| ||| C UUCCAAAUGAU CGUCCUCU UACU CGAC G   GGAACG G    GGAU GAG U            A        A    A    C ACC      A -AAU    -   U
Stem-loop sequence	AAGGUUUGCUACGCAGGAGAGAUGACGCUGUCCCUUGCACCCAUCCUAGCUUCCCUUGAGUAGGUAAGAGCAAGGCCAGCCAGCAUCAUAUCUCCUGCAUAGUAAACCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK243728.1	ncRNA:21   GAUACGUCCUCUAUACUACGA   1   =*|||*=|||||||||||||| targets:2582   UAAUGAGGGAGAUAUGAUGCU   2602 Target Full Sequence	2.0	Glycine max cDNA, clone: GMFL01-01-B12	NA	coding protein	psRNATarget
XM_006580564.2	ncRNA:21   GAUACGUCCUCUAUACUACGA   1   =*|||*=|||||||||||||| targets:2692   UAAUGAGGGAGAUAUGAUGCU   2712 Target Full Sequence	2.0	PREDICTED: Glycine max auxin response factor 2-like (LOC100815956), transcript variant X2, mRNA	auxin response factor 2-like(LOC100815956)	coding protein	psRNATarget
XM_003525385.3	ncRNA:21   GAUACGUCCUCUAUACUACGA   1   =*|||*=|||||||||||||| targets:2725   UAAUGAGGGAGAUAUGAUGCU   2745 Target Full Sequence	2.0	PREDICTED: Glycine max auxin response factor 2-like (LOC100815956), transcript variant X1, mRNA	auxin response factor 2-like(LOC100815956)	coding protein	psRNATarget
XM_003532311.3	ncRNA:21   GAUACGUCCUCUAUACUACGA   1   =*|||*=|||||||||||||| targets:2888   UAAUGAGGGAGAUAUGAUGCU   2908 Target Full Sequence	2.0	PREDICTED: Glycine max auxin response factor 2 (LOC100780892), mRNA	auxin response factor 2(LOC100780892)	coding protein	psRNATarget
AK245120.1	ncRNA:21   GAUACGUCCUCUAUACUACGA   1   =*|||*=|||||||||||||| targets:2997   UAAUGAGGGAGAUAUGAUGCU   3017 Target Full Sequence	2.0	Glycine max cDNA, clone: GMFL01-21-H21	NA	coding protein	psRNATarget
XM_006577058.2	ncRNA:21   GAUACGUCCUCUAUACUACGA   1   =*|||*||||||||||||||* targets:1902   UGAUGAAGGAGAUAUGAUGCA   1922 Target Full Sequence	2.0	PREDICTED: Glycine max auxin response factor 23-like (LOC100776512), mRNA	auxin response factor 23-like(LOC100776512)	coding protein	psRNATarget
XM_003529058.3	ncRNA:21   GAUACGUCCUCUAUACUACGA   1   =*|||*|||=||||||||||| targets:2197   UGAUGAAGGGGAUAUGAUGCU   2217 Target Full Sequence	2.5	PREDICTED: Glycine max auxin response factor 9-like (LOC100799088), mRNA	auxin response factor 9-like(LOC100799088)	coding protein	psRNATarget
XM_006602539.2	ncRNA:21   GAUACGUCCUCUAUACUACGA   1   =*|||*|||=||||||||||| targets:1688   UGAUGAAGGGGAUAUGAUGCU   1708 Target Full Sequence	2.5	PREDICTED: Glycine max auxin response factor 9-like (LOC100780060), transcript variant X2, mRNA	auxin response factor 9-like(LOC100780060)	coding protein	psRNATarget
XM_003552135.3	ncRNA:21   GAUACGUCCUCUAUACUACGA   1   =*|||*|||=||||||||||| targets:2204   UGAUGAAGGGGAUAUGAUGCU   2224 Target Full Sequence	2.5	PREDICTED: Glycine max auxin response factor 9-like (LOC100780060), transcript variant X1, mRNA	auxin response factor 9-like(LOC100780060)	coding protein	psRNATarget
XM_006585640.2	ncRNA:21   GAUACGUCCUCUAUACUACGA   1   |*|||*||*|||||||||||| targets:950   CAAUGAAGAAGAUAUGAUGCU   970 Target Full Sequence	2.5	PREDICTED: Glycine max protein RESTRICTED TEV MOVEMENT 2-like (LOC102665805), mRNA	protein RESTRICTED TEV MOVEMENT 2-like(LOC102665805)	coding protein	psRNATarget
XM_003552829.3	ncRNA:21   GAUACGUCCUCUAUACUACGA   1   **|||||**|||||||||||| targets:991   ACAUGCAAAAGAUAUGAUGCU   1011 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100810542 (LOC100810542), mRNA	uncharacterized LOC100810542(LOC100810542)	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).
2	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).
3	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).