| ncRNA ID | gma-miR172b-5p |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr13:40401673-40401825 [-] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 112 - GUAGCAUCAUCAAGAUUCAC - 131 |
| Stem-loop(if miRNA) |
UUGAC GUUU G A - -U -A G A UAU U AU AGUCGUU GC GAUGUAGCAUCAUCAAGAUUC CAUG CAAA GA GGUGGGU GG C GA GCA C ||||||| || ||||||||||||||||||||| |||| |||| || ||||||| || | || ||| C UCGGCAA CG CUACGUCGUAGUAGUUCUAAG GUGU GUUU CU CUACCUA CC G CU CGU A -AAUU AUAC A A A UU GG A - --U - GA |
| Stem-loop sequence | UUGACAGUCGUUGUUUGCGGAUGUAGCAUCAUCAAGAUUCACAUGCAAAUGAAGGUGGGUGGGACUAUGAUGCAAUCCAAGUGCUCUGCCAAUCCAUCGGUCUUUUUGAUGUGAGAAUCUUGAUGAUGCUGCAUCAGCCAUAAACGGCUUUAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_006602658.2 |
|
2.0 | PREDICTED: Glycine max probable inactive receptor kinase At5g58300 (LOC100796675), transcript variant X1, mRNA | probable inactive receptor kinase At5g58300(LOC100796675) | coding protein | psRNATarget | |||||||||
| XM_003551570.3 |
|
2.0 | PREDICTED: Glycine max probable inactive receptor kinase At5g58300 (LOC100796675), transcript variant X2, mRNA | probable inactive receptor kinase At5g58300(LOC100796675) | coding protein | psRNATarget | |||||||||
| JA894828.1 |
|
2.5 | Sequence 145 from Patent WO2011067745 | NA | coding protein | psRNATarget | |||||||||
| XM_014770733.1 |
|
3.0 | PREDICTED: Glycine max phospholipid-transporting ATPase 3 (LOC100815547), transcript variant X3, mRNA | phospholipid-transporting ATPase 3(LOC100815547) | coding protein | psRNATarget | |||||||||
| XM_003530622.3 |
|
3.0 | PREDICTED: Glycine max phospholipid-transporting ATPase 3-like (LOC100787473), mRNA | phospholipid-transporting ATPase 3-like(LOC100787473) | coding protein | psRNATarget | |||||||||
| XM_003553164.3 |
|
3.0 | PREDICTED: Glycine max phospholipid-transporting ATPase 3 (LOC100815547), transcript variant X2, mRNA | phospholipid-transporting ATPase 3(LOC100815547) | coding protein | psRNATarget | |||||||||
| XM_014770732.1 |
|
3.0 | PREDICTED: Glycine max phospholipid-transporting ATPase 3 (LOC100815547), transcript variant X1, mRNA | phospholipid-transporting ATPase 3(LOC100815547) | coding protein | psRNATarget |
| 1 | PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008). |
| 2 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |