Search result

BaseInfo

ncRNA ID	gma-miR530e
Species	Glycine max
Class	miRNA
Genome position	chr13:40319177-40319373 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	152 - UGCAUUUGCACCUGCACUUUA - 172
Stem-loop(if miRNA)	-----U    G        UU  C          UU              AA  A   A  UU      -GA     ----A         ----A  AUG             UGAU CCGAUAUG  GC UUUAUCUGCA  UGCACCUGCACUUU  GU CUC GU  CUCUGU   CAUAU     AAUAAUAUA     CU   UCAGUUG       |||| ||||||||  || ||||||||||  ||||||||||||||  || ||| ||  ||||||   |||||     |||||||||     ||   ||||||A       AUUA GGUUAUAC  CG AAGUGGACGU  ACGUGGACGUGGAG  CA GAG CA  GAGAUA   GUAUA     UUAUUAUAU     GA   AGUCAGG CCGGUU    -        --  U          CU              --  A   C  GG      AGG     AUAUA         AACUA  -GA
Stem-loop sequence	UUGAUGCCGAUAUGUUGCCUUUAUCUGCAUUUGCACCUGCACUUUAAGUACUCAGUUUCUCUGUGACAUAUAAAUAAUAUAACUAUGUCAGUUGAGGACUGAAGAGAUCAAUAUAUUAUUAUAUAAUAUGGGAAUAGAGGGACCGAGAACGAGGUGCAGGUGCAUCUGCAGGUGAAUGCCAUAUUGGAUUAUUGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014763741.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   *||=||||||||||||||||| targets:266   CAAGGUGCAGGUGCAAAUGCA   286 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X25, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763737.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   *||=||||||||||||||||| targets:266   CAAGGUGCAGGUGCAAAUGCA   286 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X21, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763735.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   *||=||||||||||||||||| targets:266   CAAGGUGCAGGUGCAAAUGCA   286 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X19, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763732.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   *||=||||||||||||||||| targets:188   CAAGGUGCAGGUGCAAAUGCA   208 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X10, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014777367.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   *||=||||||||||||||||| targets:337   CAAGGUGCAGGUGCAAAUGCA   357 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X21, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590355.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   *||=||||||||||||||||| targets:266   CAAGGUGCAGGUGCAAAUGCA   286 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X8, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763731.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   *||=||||||||||||||||| targets:281   CAAGGUGCAGGUGCAAAUGCA   301 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X9, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014777365.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   *||=||||||||||||||||| targets:338   CAAGGUGCAGGUGCAAAUGCA   358 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X15, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014763733.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:531   UCAGGUGCAGGUGCAAAUGCA   551 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X16, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763742.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:530   UCAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X26, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763739.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:530   UCAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X23, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763738.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:530   UCAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X22, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573799.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:429   UCAGGUGCAGGUGCAAAUGCA   449 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X20, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777366.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:581   UCAGGUGCAGGUGCAAAUGCA   601 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X18, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590359.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:530   UCAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X14, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763730.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:320   UCAGGUGCAGGUGCAAAUGCA   340 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X6, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006590358.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:530   UCAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X13, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014777360.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:337   UCAGGUGCAGGUGCAAAUGCA   357 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X12, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590357.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:530   UCAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X12, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006590356.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:530   UCAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X11, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573798.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:580   UCAGGUGCAGGUGCAAAUGCA   600 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X19, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590352.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:398   UCAGGUGCAGGUGCAAAUGCA   418 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X3, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014777361.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:380   UCAGGUGCAGGUGCAAAUGCA   400 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X13, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014763729.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:413   UCAGGUGCAGGUGCAAAUGCA   433 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X5, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006590360.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:531   UCAGGUGCAGGUGCAAAUGCA   551 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X15, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573797.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:579   UCAGGUGCAGGUGCAAAUGCA   599 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X17, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006573796.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:579   UCAGGUGCAGGUGCAAAUGCA   599 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X16, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590353.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:452   UCAGGUGCAGGUGCAAAUGCA   472 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X4, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573795.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:447   UCAGGUGCAGGUGCAAAUGCA   467 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X10, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777352.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:470   UCAGGUGCAGGUGCAAAUGCA   490 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X6, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_003517512.3	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:484   UCAGGUGCAGGUGCAAAUGCA   504 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X11, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590350.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:530   UCAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X1, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573792.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:511   UCAGGUGCAGGUGCAAAUGCA   531 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X1, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006573793.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:513   UCAGGUGCAGGUGCAAAUGCA   533 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X5, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590351.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:545   UCAGGUGCAGGUGCAAAUGCA   565 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X2, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573794.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:524   UCAGGUGCAGGUGCAAAUGCA   544 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X4, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777353.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:525   UCAGGUGCAGGUGCAAAUGCA   545 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X7, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777357.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:538   UCAGGUGCAGGUGCAAAUGCA   558 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X9, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006573791.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:539   UCAGGUGCAGGUGCAAAUGCA   559 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X3, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777355.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:553   UCAGGUGCAGGUGCAAAUGCA   573 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X8, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777350.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |*|=||||||||||||||||| targets:594   UCAGGUGCAGGUGCAAAUGCA   614 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X2, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014763740.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |**=||||||||||||||||| targets:398   UUUGGUGCAGGUGCAAAUGCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X24, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763736.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |**=||||||||||||||||| targets:398   UUUGGUGCAGGUGCAAAUGCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X20, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763734.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |**=||||||||||||||||| targets:398   UUUGGUGCAGGUGCAAAUGCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X18, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006590354.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |**=||||||||||||||||| targets:398   UUUGGUGCAGGUGCAAAUGCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X7, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014777363.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   |**=||||||||||||||||| targets:448   UUUGGUGCAGGUGCAAAUGCA   468 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X14, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006574473.2	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   **|=||||||||||||=|||| targets:578   GCAGGUGCAGGUGCAAGUGCA   598 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor MYB12-like (LOC100814275), mRNA	transcription factor MYB12-like(LOC100814275)	coding protein	psRNATarget
XM_014762313.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   *|||||*||*||||||||||| targets:242   CAAAGUUCAAGUGCAAAUGCA   262 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106794650 (LOC106794650), mRNA	uncharacterized LOC106794650(LOC106794650)	coding protein	psRNATarget
XM_014771454.1	ncRNA:21   AUUUCACGUCCACGUUUACGU   1   *|||||*||*||||||||||| targets:243   CAAAGUUCAAGUGCAAAUGCA   263 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106797229 (LOC106797229), mRNA	uncharacterized LOC106797229(LOC106797229)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).