ncRNA ID | gma-miR5780b |
Species | Glycine max |
Class | miRNA |
Genome position | chr13:34948197-34948412 [-] |
Reference genome | v1.0 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 172 - UCUGAGUCCAUGAUAUAUUAAA - 193 |
Stem-loop(if miRNA) |
      UUU       --        C       A                     C UU  C    CA  C A         AAC   GU CC   C    AUAUA  G UUUUUG   UGAAUUU  UCGUUGUU UGAGUCC UGAUAUAUUAAAAGUUUUGUU C  GU CCUG  GU A UUAAGUGAU   GUG  A  AUC UAAC     UU A ||||||   |||||||  |||||||| ||||||| ||||||||||||||||||||| |  || ||||  || | |||||||||   |||  |  ||| ||||     || AGGAAC   AUUUAAA  AGCAACAA ACUUAGG ACUAUAUAAUUUUCAAAACAA G  CA GGAC  CA U AAUUCACUA   CAC  U  UAG GUUG     AG A       --U       AA        A       G                     A UU  A    AA  C C         CUA   UG AA   A    --CCG  A |
Stem-loop sequence | UUUUUGUUUUGAAUUUUCGUUGUUCUGAGUCCAUGAUAUAUUAAAAGUUUUGUUCCUUGUCCCUGCAGUCAAUUAAGUGAUAACGUGGUACCAUCCUAACAUAUAUUGAAAGAGCCGUUGAGAUAAUGUCACAUCAUCACUUAACUCACAACAGGAACUUGAAACAAAACUUUUAAUAUAUCAGGGAUUCAAAACAACGAAAAAAUUUAUCAAGGA |
1 | PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014). |