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BaseInfo

ncRNA ID gma-miR5780b
Species Glycine max
Class miRNA
Genome position chr13:34948197-34948412 [-]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 172 - UCUGAGUCCAUGAUAUAUUAAA - 193
Stem-loop(if miRNA)       UUU       --        C       A                     C UU  C    CA  C A         AAC   GU CC   C    AUAUA  G
UUUUUG   UGAAUUU  UCGUUGUU UGAGUCC UGAUAUAUUAAAAGUUUUGUU C  GU CCUG  GU A UUAAGUGAU   GUG  A  AUC UAAC     UU A
||||||   |||||||  |||||||| ||||||| ||||||||||||||||||||| |  || ||||  || | |||||||||   |||  |  ||| ||||     ||
AGGAAC   AUUUAAA  AGCAACAA ACUUAGG ACUAUAUAAUUUUCAAAACAA G  CA GGAC  CA U AAUUCACUA   CAC  U  UAG GUUG     AG A
      --U       AA        A       G                     A UU  A    AA  C C         CUA   UG AA   A    --CCG  A
Stem-loop sequence UUUUUGUUUUGAAUUUUCGUUGUUCUGAGUCCAUGAUAUAUUAAAAGUUUUGUUCCUUGUCCCUGCAGUCAAUUAAGUGAUAACGUGGUACCAUCCUAACAUAUAUUGAAAGAGCCGUUGAGAUAAUGUCACAUCAUCACUUAACUCACAACAGGAACUUGAAACAAAACUUUUAAUAUAUCAGGGAUUCAAAACAACGAAAAAAUUUAUCAAGGA

Reference

1 PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons";
Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
PLoS One. 9:e86153(2014).