| ncRNA ID | gma-miR397b-3p |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr13:34382999-34383120 [-] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 10 - UAUUGACGCUGCACUCAAUCA - 30 |
| Stem-loop(if miRNA) |
G C UG U UAAAUAGUAAAU A CCUCGU GAGAAACAU AUUGAGUGCAGCGU AUGAAG CC AGCA CUACC G ||||||||| |||||||||||||| |||||| || |||| ||||| UUUUUUGUA UAACUCACGUCGCA UAUUUU GG UCGU GAUGG U U C GU - -------UAAAU A ACUCUU |
| Stem-loop sequence | GGAGAAACAUCAUUGAGUGCAGCGUUGAUGAAGUCCUAAAUAGUAAAUAGCAACUACCCCUCGUGUUUCUCAGGUAGAUGCUUAAAUGGUUUUAUUGACGCUGCACUCAAUCAUGUUUUUUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_014770336.1 |
|
2.5 | PREDICTED: Glycine max protein DETOXIFICATION 9-like (LOC100798475), transcript variant X2, mRNA | protein DETOXIFICATION 9-like(LOC100798475) | coding protein | psRNATarget | |||||||||
| XM_006602984.2 |
|
2.5 | PREDICTED: Glycine max protein DETOXIFICATION 9-like (LOC100798475), transcript variant X1, mRNA | protein DETOXIFICATION 9-like(LOC100798475) | coding protein | psRNATarget |
| 1 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |
| 2 | PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011). |