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BaseInfo

ncRNA ID	gma-miR397b-5p
Species	Glycine max
Class	miRNA
Genome position	chr13:34382999-34383120 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	93 - UCAUUGAGUGCAGCGUUGAUG - 113
Stem-loop(if miRNA)	G         C              UG      U  UAAAUAGUAAAU    A     CCUCGU  GAGAAACAU AUUGAGUGCAGCGU  AUGAAG CC            AGCA CUACC      G  ||||||||| ||||||||||||||  |||||| ||            |||| |||||  UUUUUUGUA UAACUCACGUCGCA  UAUUUU GG            UCGU GAUGG      U U         C              GU      -  -------UAAAU    A     ACUCUU
Stem-loop sequence	GGAGAAACAUCAUUGAGUGCAGCGUUGAUGAAGUCCUAAAUAGUAAAUAGCAACUACCCCUCGUGUUUCUCAGGUAGAUGCUUAAAUGGUUUUAUUGACGCUGCACUCAAUCAUGUUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003551251.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||=|||||||||||||| targets:737   CAUCAAUGCUGCACUCAAUGA   757 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-4 (LOC100782018), mRNA	laccase-4(LOC100782018)	coding protein	psRNATarget
AK244949.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||=|||||||||||||| targets:738   CAUCAAUGCUGCACUCAAUGA   758 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-17-J19	NA	coding protein	psRNATarget
XM_003539910.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||=|||||||||||||| targets:732   CAUCAAUGCUGCACUCAAUGA   752 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-4-like (LOC100785096), mRNA	laccase-4-like(LOC100785096)	coding protein	psRNATarget
XM_014770381.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||=|||||||||||||| targets:776   CAUCAAUGCUGCACUCAAUGA   796 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-4-like (LOC100806257), transcript variant X2, mRNA	laccase-4-like(LOC100806257)	coding protein	psRNATarget
XM_006602579.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||=|||||||||||||| targets:777   CAUCAAUGCUGCACUCAAUGA   797 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-4-like (LOC100806257), transcript variant X1, mRNA	laccase-4-like(LOC100806257)	coding protein	psRNATarget
XM_014770382.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||=|||||||||||||| targets:777   CAUCAAUGCUGCACUCAAUGA   797 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-4-like (LOC100806257), transcript variant X3, mRNA	laccase-4-like(LOC100806257)	coding protein	psRNATarget
BT098515.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   =|||||=|||||||||||||| targets:723   UAUCAAUGCUGCACUCAAUGA   743 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-16L15 unknown mRNA	NA	coding protein	psRNATarget
XM_003522102.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   =|||||=|||||||||||||| targets:745   UAUCAAUGCUGCACUCAAUGA   765 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-4-like (LOC100797234), mRNA	laccase-4-like(LOC100797234)	coding protein	psRNATarget
XM_003520893.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   =|||||=|||||||||||||| targets:917   UAUCAAUGCUGCACUCAAUGA   937 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-7-like (LOC100812336), mRNA	laccase-7-like(LOC100812336)	coding protein	psRNATarget
XM_014779029.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   =|||||=|||||||||||||| targets:708   UAUCAAUGCUGCACUCAAUGA   728 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-7 (LOC100792259), mRNA	laccase-7(LOC100792259)	coding protein	psRNATarget
XM_006603431.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||=|||||||||||||| targets:459   GAUCAAUGCUGCACUCAAUGA   479 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-17-like (LOC100819074), partial mRNA	laccase-17-like(LOC100819074)	coding protein	psRNATarget
XM_003516873.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   =|||||||||||||||||||* targets:774   UAUCAACGCUGCACUCAAUGC   794 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-7-like (LOC100814779), mRNA	laccase-7-like(LOC100814779)	coding protein	psRNATarget
XM_003552112.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||=|||||||||||||| targets:762   GAUCAAUGCUGCACUCAAUGA   782 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-17-like (LOC100813570), mRNA	laccase-17-like(LOC100813570)	coding protein	psRNATarget
XM_006590918.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||=|||||||||||||| targets:792   GAUCAAUGCUGCACUCAAUGA   812 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-2-like (LOC100792688), mRNA	laccase-2-like(LOC100792688)	coding protein	psRNATarget
XM_006592126.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||=|||||||||||||| targets:784   GAUCAAUGCUGCACUCAAUGA   804 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-2-like (LOC100811833), mRNA	laccase-2-like(LOC100811833)	coding protein	psRNATarget
XM_003516893.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ==||||=|||||||||||||| targets:742   UGUCAAUGCUGCACUCAAUGA   762 Target Full Sequence	1.0	PREDICTED: Glycine max laccase-4-like (LOC100779825), mRNA	laccase-4-like(LOC100779825)	coding protein	psRNATarget
XM_003552131.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *||||||||||||||=||||| targets:786   GAUCAACGCUGCACUUAAUGA   806 Target Full Sequence	1.5	PREDICTED: Glycine max laccase-17-like (LOC100777925), mRNA	laccase-17-like(LOC100777925)	coding protein	psRNATarget
XM_003532267.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *||||||||||||||=||||| targets:779   GAUCAACGCUGCACUUAAUGA   799 Target Full Sequence	1.5	PREDICTED: Glycine max laccase-17-like (LOC100798416), mRNA	laccase-17-like(LOC100798416)	coding protein	psRNATarget
XM_006583535.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *||||||||||||||=||||| targets:792   GAUCAACGCUGCACUUAAUGA   812 Target Full Sequence	1.5	PREDICTED: Glycine max laccase-17-like (LOC100811534), mRNA	laccase-17-like(LOC100811534)	coding protein	psRNATarget
XM_003529084.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *||||||||||||||||||*| targets:732   GAUCAACGCUGCACUCAAUUA   752 Target Full Sequence	1.5	PREDICTED: Glycine max laccase-7-like (LOC100814926), mRNA	laccase-7-like(LOC100814926)	coding protein	psRNATarget
XM_003544825.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *||||||||||||||*||||| targets:767   AAUCAACGCUGCACUGAAUGA   787 Target Full Sequence	1.5	PREDICTED: Glycine max laccase-4-like (LOC100786722), mRNA	laccase-4-like(LOC100786722)	coding protein	psRNATarget
XM_003518252.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *||||||||||||||*||||| targets:786   AAUCAACGCUGCACUGAAUGA   806 Target Full Sequence	1.5	PREDICTED: Glycine max laccase-4-like (LOC100799138), mRNA	laccase-4-like(LOC100799138)	coding protein	psRNATarget
AY113187.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||=||||||||||||*| targets:702   CAUCAAUGCUGCACUCAAUCA   722 Target Full Sequence	2.5	Glycine max diphenol oxidase laccase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001249687.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||=||||||||||||*| targets:746   CAUCAAUGCUGCACUCAAUCA   766 Target Full Sequence	2.5	Glycine max diphenol oxidase laccase (LOC547704), mRNA	diphenol oxidase laccase(LOC547704)	coding protein	psRNATarget
XM_003538437.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   =|||||=||||||||||||*| targets:761   UAUCAAUGCUGCACUCAAUCA   781 Target Full Sequence	2.5	PREDICTED: Glycine max laccase-12-like (LOC100808948), mRNA	laccase-12-like(LOC100808948)	coding protein	psRNATarget
XM_003552165.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||=||||||||||||*| targets:666   GAUCAAUGCUGCACUCAAUAA   686 Target Full Sequence	2.5	PREDICTED: Glycine max laccase-7-like (LOC100798292), mRNA	laccase-7-like(LOC100798292)	coding protein	psRNATarget
XM_003551434.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||=|||||||||||*|| targets:701   AAUCAAUGCUGCACUCAACGA   721 Target Full Sequence	2.5	PREDICTED: Glycine max laccase-17-like (LOC100806074), mRNA	laccase-17-like(LOC100806074)	coding protein	psRNATarget
XM_003529083.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||=||||||||||||*| targets:746   GAUCAAUGCUGCACUCAAUAA   766 Target Full Sequence	2.5	PREDICTED: Glycine max laccase-7-like (LOC100814392), mRNA	laccase-7-like(LOC100814392)	coding protein	psRNATarget
XM_003530164.3	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||=|||||||||||*|| targets:703   AAUCAAUGCUGCACUCAACGA   723 Target Full Sequence	2.5	PREDICTED: Glycine max laccase-17-like (LOC100810993), mRNA	laccase-17-like(LOC100810993)	coding protein	psRNATarget
AK244379.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *||||||*|||||||||||*| targets:707   AAUCAACUCUGCACUCAAUAA   727 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-02-N16	NA	coding protein	psRNATarget
XM_003520894.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *||||||*|||||||||||*| targets:729   AAUCAACUCUGCACUCAAUAA   749 Target Full Sequence	2.5	PREDICTED: Glycine max laccase-7 (LOC100812879), mRNA	laccase-7(LOC100812879)	coding protein	psRNATarget

Reference

1	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).