| ncRNA ID | gma-miR396a-3p |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr13:26338134-26338273 [-] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 18 - UUCAAUAAAGCUGUGGGAAG - 37 |
| Stem-loop(if miRNA) |
UCA C UC C UCCA GAGUUCCUUUGCAUGCAUGCC UGGCUCU UUUGUAU UUCCACAGCUUU UUGAACUGCA AA A ||||||| ||||||| |||||||||||| |||||||||| || ACUGGGA AGACAUA AGGGUGUCGAAA AACUUGGCGU GU U -CA U GA U -UUU UCUAAACCCUCAUUCUCACGG |
| Stem-loop sequence | UCAUGGCUCUCUUUGUAUUCUUCCACAGCUUUCUUGAACUGCAUCCAAAGAGUUCCUUUGCAUGCAUGCCAUGGCACUCUUACUCCCAAAUCUUGUUUUGCGGUUCAAUAAAGCUGUGGGAAGAUACAGAUAGGGUCAAC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_014768884.1 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100796634 (LOC100796634), transcript variant X4, mRNA | uncharacterized LOC100796634(LOC100796634) | coding protein | psRNATarget | |||||||||
| XM_014768883.1 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100796634 (LOC100796634), transcript variant X3, mRNA | uncharacterized LOC100796634(LOC100796634) | coding protein | psRNATarget | |||||||||
| XM_006598718.2 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100796634 (LOC100796634), transcript variant X1, mRNA | uncharacterized LOC100796634(LOC100796634) | coding protein | psRNATarget | |||||||||
| XM_006598721.2 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100796634 (LOC100796634), transcript variant X5, mRNA | uncharacterized LOC100796634(LOC100796634) | coding protein | psRNATarget | |||||||||
| XM_006598717.2 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100796634 (LOC100796634), transcript variant X2, mRNA | uncharacterized LOC100796634(LOC100796634) | coding protein | psRNATarget |
| 1 | PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008). |
| 2 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |