Search result

BaseInfo

ncRNA ID gma-miR396a-5p
Species Glycine max
Class miRNA
Genome position chr13:26338134-26338273 [-]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 100 - UUCCACAGCUUUCUUGAACUG - 120
Stem-loop(if miRNA) UCA       C       UC            C          UCCA  GAGUUCCUUUGCAUGCAUGCC
   UGGCUCU UUUGUAU  UUCCACAGCUUU UUGAACUGCA    AA                     A
   ||||||| |||||||  |||||||||||| ||||||||||    ||
   ACUGGGA AGACAUA  AGGGUGUCGAAA AACUUGGCGU    GU                     U
-CA       U       GA            U          -UUU  UCUAAACCCUCAUUCUCACGG
Stem-loop sequence UCAUGGCUCUCUUUGUAUUCUUCCACAGCUUUCUUGAACUGCAUCCAAAGAGUUCCUUUGCAUGCAUGCCAUGGCACUCUUACUCCCAAAUCUUGUUUUGCGGUUCAAUAAAGCUGUGGGAAGAUACAGAUAGGGUCAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ242718.1
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  ||*|||||||*||||||||||
targets:92   CAAUUCAAGAUAGCUGUGGAA   112

2.5 Sequence 8713 from Patent EP2985353 NA coding protein psRNATarget
JB171049.1
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  ||*|||||||*||||||||||
targets:92   CAAUUCAAGAUAGCUGUGGAA   112

2.5 Sequence 8713 from Patent EP2559767 NA coding protein psRNATarget
HI410588.1
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  ||*|||||||*||||||||||
targets:92   CAAUUCAAGAUAGCUGUGGAA   112

2.5 Sequence 8713 from Patent EP2074227 NA coding protein psRNATarget
XM_014766392.1
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  ==|*||||||||||*||||||
targets:869   UGGAUCAAGAAAGCAGUGGAA   889

2.5 PREDICTED: Glycine max IQ domain-containing protein IQM4-like (LOC100811314), transcript variant X2, mRNA IQ domain-containing protein IQM4-like(LOC100811314) coding protein psRNATarget
XM_014763023.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:632   CCGUUCAAGAAAGCCUGUGGAA   653

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100814300), transcript variant X2, mRNA growth-regulating factor 3-like(LOC100814300) coding protein psRNATarget
XM_003536999.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:644   CCGUUCAAGAAAGCCUGUGGAA   665

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100814300), transcript variant X1, mRNA growth-regulating factor 3-like(LOC100814300) coding protein psRNATarget
XM_003537618.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:441   CCGUUCAAGAAAGCCUGUGGAA   462

3.0 PREDICTED: Glycine max growth-regulating factor 4-like (LOC100817313), mRNA growth-regulating factor 4-like(LOC100817313) coding protein psRNATarget
XM_003517510.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:560   CCGUUCAAGAAAGCCUGUGGAA   581

3.0 PREDICTED: Glycine max growth-regulating factor 4-like (LOC100797906), mRNA growth-regulating factor 4-like(LOC100797906) coding protein psRNATarget
XM_003539994.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:548   CCGUUCAAGAAAGCCUGUGGAA   569

3.0 PREDICTED: Glycine max growth-regulating factor 4-like (LOC100787226), mRNA growth-regulating factor 4-like(LOC100787226) coding protein psRNATarget
XM_003538953.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:614   CCGUUCAAGAAAGCCUGUGGAA   635

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100787567), mRNA growth-regulating factor 5-like(LOC100787567) coding protein psRNATarget
XM_006598769.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:758   CCGUUCAAGAAAGCCUGUGGAA   779

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100814760), transcript variant X2, mRNA growth-regulating factor 5-like(LOC100814760) coding protein psRNATarget
XM_006598768.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:758   CCGUUCAAGAAAGCCUGUGGAA   779

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100814760), transcript variant X1, mRNA growth-regulating factor 5-like(LOC100814760) coding protein psRNATarget
XM_003533411.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:539   CCGUUCAAGAAAGCCUGUGGAA   560

3.0 PREDICTED: Glycine max growth-regulating factor 4-like (LOC100777524), mRNA growth-regulating factor 4-like(LOC100777524) coding protein psRNATarget
XM_003516444.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:549   CCGUUCAAGAAAGCCUGUGGAA   570

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100809947), mRNA growth-regulating factor 3-like(LOC100809947) coding protein psRNATarget
XM_003521400.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:861   CCGUUCAAGAAAGCCUGUGGAA   882

3.0 PREDICTED: Glycine max growth-regulating factor 3 (LOC100816436), transcript variant X2, mRNA growth-regulating factor 3(LOC100816436) coding protein psRNATarget
XM_014773900.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:911   CCGUUCAAGAAAGCCUGUGGAA   932

3.0 PREDICTED: Glycine max growth-regulating factor 3 (LOC100816436), transcript variant X1, mRNA growth-regulating factor 3(LOC100816436) coding protein psRNATarget
XM_003551083.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:634   CCGUUCAAGAAAGCCUGUGGAA   655

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100807835), mRNA growth-regulating factor 1-like(LOC100807835) coding protein psRNATarget
XM_003547671.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:758   CCGUUCAAGAAAGCCUGUGGAA   779

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100814760), transcript variant X3, mRNA growth-regulating factor 5-like(LOC100814760) coding protein psRNATarget
XM_006594137.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:606   CCGUUCAAGAAAGCCUGUGGAA   627

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100817197), transcript variant X2, mRNA growth-regulating factor 3-like(LOC100817197) coding protein psRNATarget
XM_003542518.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:618   CCGUUCAAGAAAGCCUGUGGAA   639

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100817197), transcript variant X1, mRNA growth-regulating factor 3-like(LOC100817197) coding protein psRNATarget
XM_003553541.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:1142   CCGUUCAAGAAAGCCUGUGGAA   1163

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100814842), mRNA growth-regulating factor 3-like(LOC100814842) coding protein psRNATarget
XM_014777701.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:822   CCGUUCAAGAAAGCCUGUGGAA   843

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100806024), transcript variant X2, mRNA growth-regulating factor 5-like(LOC100806024) coding protein psRNATarget
XM_003529787.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:864   CCGUUCAAGAAAGCCUGUGGAA   885

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100806024), transcript variant X1, mRNA growth-regulating factor 5-like(LOC100806024) coding protein psRNATarget
XM_006578811.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:1113   CCGUUCAAGAAAGCCUGUGGAA   1134

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100803096), transcript variant X1, mRNA growth-regulating factor 7-like(LOC100803096) coding protein psRNATarget
XM_003522484.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:1113   CCGUUCAAGAAAGCCUGUGGAA   1134

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100803096), transcript variant X2, mRNA growth-regulating factor 7-like(LOC100803096) coding protein psRNATarget
XM_006581609.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:1100   CCGUUCAAGAAAGCCUGUGGAA   1121

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100796948), transcript variant X2, mRNA growth-regulating factor 7-like(LOC100796948) coding protein psRNATarget
XM_003526701.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:1102   CCGUUCAAGAAAGCCUGUGGAA   1123

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100796948), transcript variant X1, mRNA growth-regulating factor 7-like(LOC100796948) coding protein psRNATarget
BT090627.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:371   UCGUUCAAGAAAGCCUGUGGAA   392

3.0 Soybean clone JCVI-FLGm-4P14 unknown mRNA NA coding protein psRNATarget
XM_014761974.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:445   UCGUUCAAGAAAGCCUGUGGAA   466

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100814271), transcript variant X2, mRNA growth-regulating factor 1-like(LOC100814271) coding protein psRNATarget
XM_003534897.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:442   UCGUUCAAGAAAGCCUGUGGAA   463

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100814271), transcript variant X1, mRNA growth-regulating factor 1-like(LOC100814271) coding protein psRNATarget
XM_014767399.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:389   UCGUUCAAGAAAGCCUGUGGAA   410

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100781613), transcript variant X2, mRNA growth-regulating factor 1-like(LOC100781613) coding protein psRNATarget
XM_003547454.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:388   UCGUUCAAGAAAGCCUGUGGAA   409

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100781613), transcript variant X1, mRNA growth-regulating factor 1-like(LOC100781613) coding protein psRNATarget
XM_006573382.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:763   UCGUUCAAGAAAGCCUGUGGAA   784

3.0 PREDICTED: Glycine max growth-regulating factor 9-like (LOC100795050), transcript variant X3, mRNA growth-regulating factor 9-like(LOC100795050) coding protein psRNATarget
XM_003516424.3
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:754   UCGUUCAAGAAAGCCUGUGGAA   775

3.0 PREDICTED: Glycine max growth-regulating factor 9-like (LOC100795050), transcript variant X2, mRNA growth-regulating factor 9-like(LOC100795050) coding protein psRNATarget
XM_006573381.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:761   UCGUUCAAGAAAGCCUGUGGAA   782

3.0 PREDICTED: Glycine max growth-regulating factor 9-like (LOC100795050), transcript variant X1, mRNA growth-regulating factor 9-like(LOC100795050) coding protein psRNATarget
NM_001248920.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:772   UCGUUCAAGAAAGCCUGUGGAA   793

3.0 Glycine max QLQ and WRC domain-containing protein (LOC100306494), mRNA uncharacterized LOC100306494(LOC100306494) coding protein psRNATarget
XM_006576092.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:778   UCGUUCAAGAAAGCCUGUGGAA   799

3.0 PREDICTED: Glycine max uncharacterized LOC100306494 (LOC100306494), transcript variant X1, mRNA uncharacterized LOC100306494(LOC100306494) coding protein psRNATarget
XM_006593881.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:735   UCGUUCAAGAAAGCCUGUGGAA   756

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100783524), transcript variant X2, mRNA growth-regulating factor 1-like(LOC100783524) coding protein psRNATarget
XM_014765435.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:738   UCGUUCAAGAAAGCCUGUGGAA   759

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100783524), transcript variant X3, mRNA growth-regulating factor 1-like(LOC100783524) coding protein psRNATarget
XM_014765434.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:741   UCGUUCAAGAAAGCCUGUGGAA   762

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100783524), transcript variant X1, mRNA growth-regulating factor 1-like(LOC100783524) coding protein psRNATarget

Reference

1 PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots";
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
BMC Genomics. 9:160(2008).
2 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).
© 2017 OPP-ncRBASE. All rights reserved.