| ncRNA ID | gma-miR396b-3p |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr13:26329931-26330056 [+] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 89 - GCUCAAGAAAGCUGUGGGAGA - 109 |
| Stem-loop(if miRNA) |
CUCA U ---- C A UAU AUCUUAU U CCA AG CCUG GUCAUG UUUUCCACAGCUUUCUUGA CUUCU GC AUC CU C || |||| |||||| ||||||||||||||||||| ||||| || ||| || UC GGAC CGGUAU AGAGGGUGUCGAAAGAACU GAAGA CG UAG GA C ---- - UUAA A C UCC --AAUUU - CCU |
| Stem-loop sequence | CUCAAGUCCUGGUCAUGCUUUUCCACAGCUUUCUUGAACUUCUUAUGCAUCUUAUAUCUCUCCACCUCCAGGAUUUUAAGCCCUAGAAGCUCAAGAAAGCUGUGGGAGAAUAUGGCAAUUCAGGCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JB171049.1 |
|
2.5 | Sequence 8713 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
| HI410588.1 |
|
2.5 | Sequence 8713 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
| LQ242718.1 |
|
2.5 | Sequence 8713 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
| BT092755.1 |
|
2.5 | Soybean clone JCVI-FLGm-11N21 unknown mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008). |
| 2 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |
| 3 | PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011). |