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BaseInfo

ncRNA ID gma-miR396b-5p
Species Glycine max
Class miRNA
Genome position chr13:26329931-26330056 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 21 - UUCCACAGCUUUCUUGAACUU - 41
Stem-loop(if miRNA) CUCA  U    ----      C                   A     UAU  AUCUUAU   U  CCA
    AG CCUG    GUCAUG UUUUCCACAGCUUUCUUGA CUUCU   GC       AUC CU   C
    || ||||    |||||| ||||||||||||||||||| |||||   ||       ||| ||
    UC GGAC    CGGUAU AGAGGGUGUCGAAAGAACU GAAGA   CG       UAG GA   C
----  -    UUAA      A                   C     UCC  --AAUUU   -  CCU
Stem-loop sequence CUCAAGUCCUGGUCAUGCUUUUCCACAGCUUUCUUGAACUUCUUAUGCAUCUUAUAUCUCUCCACCUCCAGGAUUUUAAGCCCUAGAAGCUCAAGAAAGCUGUGGGAGAAUAUGGCAAUUCAGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006574464.2
ncRNA:21   UUCAAGUUCUUUCGACACCUU   1
  ==|*||||||||||*||||||
targets:1147   GGGAUCAAGAAAGCAGUGGAA   1167

2.5 PREDICTED: Glycine max long chain acyl-CoA synthetase 1-like (LOC100816578), transcript variant X1, mRNA long chain acyl-CoA synthetase 1-like(LOC100816578) coding protein psRNATarget
XM_003516444.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:549   CCGUUCAAGAAAGCCUGUGGAA   570

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100809947), mRNA growth-regulating factor 3-like(LOC100809947) coding protein psRNATarget
XM_003533411.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:539   CCGUUCAAGAAAGCCUGUGGAA   560

3.0 PREDICTED: Glycine max growth-regulating factor 4-like (LOC100777524), mRNA growth-regulating factor 4-like(LOC100777524) coding protein psRNATarget
XM_006578811.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1113   CCGUUCAAGAAAGCCUGUGGAA   1134

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100803096), transcript variant X1, mRNA growth-regulating factor 7-like(LOC100803096) coding protein psRNATarget
XM_006595936.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1138   UCGUUCAAGAAAGCCUGUGGAA   1159

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100807080), mRNA growth-regulating factor 1-like(LOC100807080) coding protein psRNATarget
XM_003522484.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1113   CCGUUCAAGAAAGCCUGUGGAA   1134

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100803096), transcript variant X2, mRNA growth-regulating factor 7-like(LOC100803096) coding protein psRNATarget
XM_014773156.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:891   UCGUUCAAGAAAGCCUGUGGAA   912

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100807610), transcript variant X2, mRNA growth-regulating factor 1-like(LOC100807610) coding protein psRNATarget
XM_003549320.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1146   UCGUUCAAGAAAGCCUGUGGAA   1167

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100819396), mRNA growth-regulating factor 1-like(LOC100819396) coding protein psRNATarget
XM_006581609.2
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1100   CCGUUCAAGAAAGCCUGUGGAA   1121

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100796948), transcript variant X2, mRNA growth-regulating factor 7-like(LOC100796948) coding protein psRNATarget
XM_003526701.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1102   CCGUUCAAGAAAGCCUGUGGAA   1123

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100796948), transcript variant X1, mRNA growth-regulating factor 7-like(LOC100796948) coding protein psRNATarget
XM_014773155.1
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1107   UCGUUCAAGAAAGCCUGUGGAA   1128

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100807610), transcript variant X1, mRNA growth-regulating factor 1-like(LOC100807610) coding protein psRNATarget
XM_003549319.3
ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1
  **||||||||||||-|||||||
targets:1135   UCGUUCAAGAAAGCCUGUGGAA   1156

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100818860), mRNA growth-regulating factor 1-like(LOC100818860) coding protein psRNATarget

Reference

1 PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots";
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
BMC Genomics. 9:160(2008).
2 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).
3 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).
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