| ncRNA ID | gma-miR1507a |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr13:25849777-25849883 [+] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 76 - UCUCAUUCCAUACAUCGUCUGA - 97 |
| Stem-loop(if miRNA) |
-CAGU G - A - UUUUC GUUUG CAGA GGUGUAUGGAGUGAGAGA GGGAA AGGGUA CGAUU ||||| |||| |||||||||||||||||| ||||| |||||| ||||C CAAGC GUCU CUACAUACCUUACUCUCU CCCUU UCUCAU GCUGU CUAUG A G - C ----U |
| Stem-loop sequence | CAGUGUUUGGCAGAGGUGUAUGGAGUGAGAGAAGGGAAAGGGUAUUUUCCGAUUCUGUCGUUACUCUCUUCCCUCUCUCAUUCCAUACAUCGUCUGACGAACGUAUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HI410589.1 |
|
0.0 | Sequence 8714 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
| LQ242701.1 |
|
0.0 | Sequence 8696 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
| LQ242719.1 |
|
0.0 | Sequence 8714 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
| HI410571.1 |
|
0.0 | Sequence 8696 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
| JB171032.1 |
|
0.0 | Sequence 8696 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
| JB171050.1 |
|
0.0 | Sequence 8714 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
| XM_014775374.1 |
|
2.0 | PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 33B-like (LOC100783353), transcript variant X2, mRNA | mediator of RNA polymerase II transcription subunit 33B-like(LOC100783353) | coding protein | psRNATarget | |||||||||
| XM_003525638.3 |
|
2.0 | PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 33B-like (LOC100783353), transcript variant X1, mRNA | mediator of RNA polymerase II transcription subunit 33B-like(LOC100783353) | coding protein | psRNATarget | |||||||||
| XM_006591252.2 |
|
2.5 | PREDICTED: Glycine max disease resistance protein RGA2-like (LOC100810734), mRNA | disease resistance protein RGA2-like(LOC100810734) | coding protein | psRNATarget |
| 1 | PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008). |
| 2 | PMID:19084500
"Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"; Wang Y, Li P, Cao X, Wang X, Zhang A, Li X; Biochem Biophys Res Commun. 378:799-803(2009). |
| 3 | PMID:21504877
"MicroRNAs in the shoot apical meristem of soybean"; Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL; J Exp Bot. 62:2495-2506(2011). |