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BaseInfo

ncRNA ID gma-miR160d
Species Glycine max
Class miRNA
Genome position chr13:23749976-23750066 [-]
Reference genome v1.0
Source miRBase
Length 20
Mature sequence(if miRNA) 72 - UGCCUGGCUCCCUGUAUGCC - 91
Stem-loop(if miRNA) -----------   C       CU             A  CC       A
           UGC UGGCUCC  GUAUGCCAUUUGU GA  CCAUUAC A
           ||| |||||||  ||||||||||||| ||  |||||||
           ACG ACUGAGG  UAUGCGGUAAACG UU  GGUAGUG A
UUUUGUGUCGU   U       AG             A  CC       G
Stem-loop sequence UGCCUGGCUCCCUGUAUGCCAUUUGUAGACCCCAUUACAAAGGUGAUGGCCUUAGCAAAUGGCGUAUGAGGAGUCAUGCAUGCUGUGUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003555388.3
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  ||||||||||||||||||||
targets:1552   GGCAUACAGGGAGCCAGGCA   1571

0.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100818234), mRNA auxin response factor 18-like(LOC100818234) coding protein psRNATarget
XM_003535482.3
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  ||||||||||||||||||||
targets:1556   GGCAUACAGGGAGCCAGGCA   1575

0.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100803053), mRNA auxin response factor 18-like(LOC100803053) coding protein psRNATarget
XM_003540137.3
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  ||||||||||||||||||||
targets:1644   GGCAUACAGGGAGCCAGGCA   1663

0.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100778135), transcript variant X1, mRNA auxin response factor 18-like(LOC100778135) coding protein psRNATarget
XM_006592639.2
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  ||||||||||||||||||||
targets:1691   GGCAUACAGGGAGCCAGGCA   1710

0.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100778135), transcript variant X2, mRNA auxin response factor 18-like(LOC100778135) coding protein psRNATarget
XM_003543422.3
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  ||||||||||||||||||||
targets:1808   GGCAUACAGGGAGCCAGGCA   1827

0.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100808472), mRNA auxin response factor 18-like(LOC100808472) coding protein psRNATarget
XM_006604512.2
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  ||||||||||||||||||||
targets:2236   GGCAUACAGGGAGCCAGGCA   2255

0.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100791442), mRNA auxin response factor 18-like(LOC100791442) coding protein psRNATarget
JB171043.1
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  |||||=||||||||||||||
targets:167   GGCAUGCAGGGAGCCAGGCA   186

1.0 Sequence 8707 from Patent EP2559767 NA coding protein psRNATarget
LQ242712.1
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  |||||=||||||||||||||
targets:167   GGCAUGCAGGGAGCCAGGCA   186

1.0 Sequence 8707 from Patent EP2985353 NA coding protein psRNATarget
HI410582.1
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  |||||=||||||||||||||
targets:167   GGCAUGCAGGGAGCCAGGCA   186

1.0 Sequence 8707 from Patent EP2074227 NA coding protein psRNATarget
XM_006596796.2
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  |||||=||||||||||||||
targets:1462   GGCAUGCAGGGAGCCAGGCA   1481

1.0 PREDICTED: Glycine max auxin response factor 17-like (LOC100804933), mRNA auxin response factor 17-like(LOC100804933) coding protein psRNATarget
XM_003543732.3
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  |||||=||||||||||||||
targets:1540   GGCAUGCAGGGAGCCAGGCA   1559

1.0 PREDICTED: Glycine max auxin response factor 17-like (LOC100805638), mRNA auxin response factor 17-like(LOC100805638) coding protein psRNATarget
XM_006578927.2
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  |||||=||||||||||||||
targets:1510   GGCAUGCAGGGAGCCAGGCA   1529

1.0 PREDICTED: Glycine max auxin response factor 17-like (LOC102662128), mRNA auxin response factor 17-like(LOC102662128) coding protein psRNATarget
XM_014762999.1
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  |||||=||||||||||||||
targets:1475   GGCAUGCAGGGAGCCAGGCA   1494

1.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X3, mRNA auxin response factor 18-like(LOC100796522) coding protein psRNATarget
XM_003537248.3
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  |||||=||||||||||||||
targets:1743   GGCAUGCAGGGAGCCAGGCA   1762

1.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X2, mRNA auxin response factor 18-like(LOC100796522) coding protein psRNATarget
XM_014763000.1
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  |||||=||||||||||||||
targets:1975   GGCAUGCAGGGAGCCAGGCA   1994

1.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X4, mRNA auxin response factor 18-like(LOC100796522) coding protein psRNATarget
XM_006588721.2
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  |||||=||||||||||||||
targets:1975   GGCAUGCAGGGAGCCAGGCA   1994

1.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X1, mRNA auxin response factor 18-like(LOC100796522) coding protein psRNATarget
XM_003538112.3
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  ||*|||||||||||||||||
targets:1519   GGGAUACAGGGAGCCAGGCA   1538

1.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100810558), mRNA auxin response factor 18-like(LOC100810558) coding protein psRNATarget
XM_003539718.3
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  ||*|||||||||||||||||
targets:1573   GGGAUACAGGGAGCCAGGCA   1592

1.0 PREDICTED: Glycine max auxin response factor 18-like (LOC100814686), mRNA auxin response factor 18-like(LOC100814686) coding protein psRNATarget
XM_003533214.3
ncRNA:20   CCGUAUGUCCCUCGGUCCGU   1
  |||||||=||||||||||||
targets:2545   GGCAUACGGGGAGCCAGGCA   2564

1.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100818857), mRNA putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100818857) coding protein psRNATarget

Reference

1 PMID:21504877
"MicroRNAs in the shoot apical meristem of soybean";
Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL;
J Exp Bot. 62:2495-2506(2011).
2 PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons";
Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
PLoS One. 9:e86153(2014).
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