Search result

BaseInfo

ncRNA ID ath-miR164b-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:287584-287736 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 3 - UGGAGAAGCAGGGCACGUGCA - 23
Stem-loop(if miRNA)      A    CA         CAUU          A    ----   U    C    --A      G     A     A
GAUGG GAAG  GGGCACGUG    ACUAGCUCAU UAUA    CAC CUCA CACA   AUGCGU UAUAU UGCGG A
||||| ||||  |||||||||    |||||||||| ||||    ||| |||| ||||   |||||| ||||| |||||
CUACC CUUC  CCCGUGUAC    UGAUUGAGUA GUAU    GUG GAGU GUGU   UGUGUA AUAUA GUGUU U
     A    UA         UUCU          G    AGUA   U    U    GUG      G     -     U
Stem-loop sequence GAUGGAGAAGCAGGGCACGUGCAUUACUAGCUCAUAUAUACACUCUCACCACAAAUGCGUGUAUAUAUGCGGAAUUUUGUGAUAUAGAUGUGUGUGUGUGUUGAGUGUGAUGAUAUGGAUGAGUUAGUUCUUCAUGUGCCCAUCUUCACCAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BX832490.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:808   UUUACGUGCCCUGCUUCUCCA   828

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH76ZF08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT006419.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:626   UUUACGUGCCCUGCUUCUCCA   646

1.0 Arabidopsis thaliana At5g07680 gene, complete cds NA coding protein psRNATarget
AY081496.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:632   UCUACGUGCCCUGCUUCUCCA   652

1.0 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds NA coding protein psRNATarget
NM_180458.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:651   UUUACGUGCCCUGCUUCUCCA   671

1.0 Arabidopsis thaliana NAC domain containing protein 80 (NAC080), mRNA NAC domain containing protein 80(NAC080) coding protein psRNATarget
AY087700.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:651   UUUACGUGCCCUGCUUCUCCA   671

1.0 Arabidopsis thaliana clone 37792 mRNA, complete sequence NA coding protein psRNATarget
AY054644.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:742   UCUACGUGCCCUGCUUCUCCA   762

1.0 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds NA coding protein psRNATarget
AY085102.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:809   UCUACGUGCCCUGCUUCUCCA   829

1.0 Arabidopsis thaliana clone 12970 mRNA, complete sequence NA coding protein psRNATarget
BX829852.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:797   UCUACGUGCCCUGCUUCUCCA   817

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB40ZG05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AK228027.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:843   UUUACGUGCCCUGCUUCUCCA   863

1.0 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-54-D06 NA coding protein psRNATarget
BX832226.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:873   UUUACGUGCCCUGCUUCUCCA   893

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH5ZF02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_125536.4
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:866   UCUACGUGCCCUGCUUCUCCA   886

1.0 Arabidopsis thaliana NAC domain containing protein 100 (NAC100), mRNA NAC domain containing protein 100(NAC100) coding protein psRNATarget
NM_001345474.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:970   UCUACGUGCCCUGCUUCUCCA   990

1.0 Arabidopsis thaliana NAC domain containing protein 100 (NAC100), mRNA NAC domain containing protein 100(NAC100) coding protein psRNATarget
NM_120850.4
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  |*=||||||||||||||||||
targets:923   UUUACGUGCCCUGCUUCUCCA   943

1.0 Arabidopsis thaliana NAC domain containing protein 80 (NAC080), mRNA NAC domain containing protein 80(NAC080) coding protein psRNATarget
BT005873.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:464   AGCACGUACCCUGCUUCUCCA   484

1.0 Arabidopsis thaliana At1g56010 gene, complete cds NA coding protein psRNATarget
AK228347.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:777   AGCACGUACCCUGCUUCUCCA   797

1.0 Arabidopsis thaliana mRNA for NAC1, complete cds, clone: RAFL14-76-M12 NA coding protein psRNATarget
AF198054.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:753   AGCACGUACCCUGCUUCUCCA   773

1.0 Arabidopsis thaliana NAC1 (NAC1) mRNA, complete cds NA coding protein psRNATarget
AY085996.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:762   AGCACGUACCCUGCUUCUCCA   782

1.0 Arabidopsis thaliana clone 205648 mRNA, complete sequence NA coding protein psRNATarget
NM_104479.2
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:802   AGCACGUACCCUGCUUCUCCA   822

1.0 Arabidopsis thaliana NAC domain containing protein 1 (NAC1), mRNA NAC domain containing protein 1(NAC1) coding protein psRNATarget
NM_179486.2
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  *||||||*|||||||||||||
targets:1706   AGCACGUACCCUGCUUCUCCA   1726

1.0 Arabidopsis thaliana NAC domain containing protein 1 (NAC1), mRNA NAC domain containing protein 1(NAC1) coding protein psRNATarget
AJ276766.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  *|||=||*|||||||||||||
targets:129   AGCAUGUACCCUGCUUCUCCA   149

2.0 Arabidopsis thaliana partial mRNA, clone DiDi 19C-1a NA coding protein psRNATarget
NM_001338015.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  *|||=||*|||||||||||||
targets:728   AGCAUGUACCCUGCUUCUCCA   748

2.0 Arabidopsis thaliana NAC (No Apical Meristem) domain transcriptional regulator superfamily protein mRNA NAC (No Apical Meristem) domain transcriptional regulator superfamily protein(AT3G12977) coding protein psRNATarget
NM_001035606.4
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  *|||=||*|||||||||||||
targets:919   AGCAUGUACCCUGCUUCUCCA   939

2.0 Arabidopsis thaliana NAC (No Apical Meristem) domain transcriptional regulator superfamily protein mRNA NAC (No Apical Meristem) domain transcriptional regulator superfamily protein(AT3G12977) coding protein psRNATarget
BX830975.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  **||||||*|||||||||||=
targets:202   CUCACGUGACCUGCUUCUCCG   222

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS44ZG06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX830509.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  **||||||*|||||||||||=
targets:464   CUCACGUGACCUGCUUCUCCG   484

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB87ZG05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY174163.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  **||||||*|||||||||||=
targets:632   CUCACGUGACCUGCUUCUCCG   652

2.5 Arabidopsis thaliana ecotype Columbia no apical meristem-like protein mRNA, complete cds NA coding protein psRNATarget
AY091191.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  **||||||*|||||||||||=
targets:632   CUCACGUGACCUGCUUCUCCG   652

2.5 Arabidopsis thaliana putative NAM/CUC2 protein (At5g39610) mRNA, complete cds NA coding protein psRNATarget
AY084635.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  **||||||*|||||||||||=
targets:765   CUCACGUGACCUGCUUCUCCG   785

2.5 Arabidopsis thaliana clone 113779 mRNA, complete sequence NA coding protein psRNATarget
AY056327.1
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  **||||||*|||||||||||=
targets:755   CUCACGUGACCUGCUUCUCCG   775

2.5 Arabidopsis thaliana putative NAM / CUC2 protein (At5g39610) mRNA, complete cds NA coding protein psRNATarget
NM_123323.3
ncRNA:21   ACGUGCACGGGACGAAGAGGU   1
  **||||||*|||||||||||=
targets:893   CUCACGUGACCUGCUUCUCCG   913

2.5 Arabidopsis thaliana NAC domain containing protein 6 (NAC6), mRNA NAC domain containing protein 6(NAC6) coding protein psRNATarget

Reference

1 PMID:12101121
"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:12202040
"Prediction of plant microRNA targets";
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP;
Cell. 110:513-520(2002).
3 PMID:16040653
"Expression of Arabidopsis MIRNA genes";
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
Plant Physiol. 138:2145-2154(2005).
4 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
5 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
6 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).
© 2017 OPP-ncRBASE. All rights reserved.