Search result

BaseInfo

ncRNA ID	gma-miR530a
Species	Glycine max
Class	miRNA
Genome position	chr12:33689552-33689701 [+]
Reference genome	v1.0
Source	miRBase
Length	20
Mature sequence(if miRNA)	12 - UGCAUUUGCACCUGCACUUU - 31
Stem-loop(if miRNA)	UUGCCU         UU              AAUUA      U       -GA    AA  A      -    G  AGG       UUAUCUGCA  UGCACCUGCACUUU     CUUGGU UCUCUGU   CAUA  UA AUAUAA AUAU UC   U       |||||||||  ||||||||||||||     |||||| |||||||   ||||  || |||||| |||| ||       AGUGGACGU  ACGUGGACGUGGAG     GAGCCA GGAGAUA   GUAU  AU UAUAUU UAUA AG   A -----A         CU              --CAA      U       AGG    -A  A      A    A  AGA
Stem-loop sequence	UUGCCUUUAUCUGCAUUUGCACCUGCACUUUAAUUACUUGGUUUCUCUGUGACAUAAAUAAAUAUAAAUAUGUCAGGUAAGAGAAAUAUAUUAUAUAUAAUAUGGGAAUAGAGGUACCGAGAACGAGGUGCAGGUGCAUCUGCAGGUGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014763741.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   ||=||||||||||||||||| targets:267   AAGGUGCAGGUGCAAAUGCA   286 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X25, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763737.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   ||=||||||||||||||||| targets:267   AAGGUGCAGGUGCAAAUGCA   286 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X21, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763735.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   ||=||||||||||||||||| targets:267   AAGGUGCAGGUGCAAAUGCA   286 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X19, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763732.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   ||=||||||||||||||||| targets:189   AAGGUGCAGGUGCAAAUGCA   208 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X10, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014777367.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   ||=||||||||||||||||| targets:338   AAGGUGCAGGUGCAAAUGCA   357 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X21, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590355.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   ||=||||||||||||||||| targets:267   AAGGUGCAGGUGCAAAUGCA   286 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X8, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763731.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   ||=||||||||||||||||| targets:282   AAGGUGCAGGUGCAAAUGCA   301 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X9, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014777365.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   ||=||||||||||||||||| targets:339   AAGGUGCAGGUGCAAAUGCA   358 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X15, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014763733.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:532   CAGGUGCAGGUGCAAAUGCA   551 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X16, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763742.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:531   CAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X26, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763739.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:531   CAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X23, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763738.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:531   CAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X22, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573799.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:430   CAGGUGCAGGUGCAAAUGCA   449 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X20, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777366.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:582   CAGGUGCAGGUGCAAAUGCA   601 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X18, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590359.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:531   CAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X14, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763730.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:321   CAGGUGCAGGUGCAAAUGCA   340 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X6, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006590358.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:531   CAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X13, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014777360.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:338   CAGGUGCAGGUGCAAAUGCA   357 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X12, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590357.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:531   CAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X12, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006590356.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:531   CAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X11, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573798.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:581   CAGGUGCAGGUGCAAAUGCA   600 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X19, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590352.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:399   CAGGUGCAGGUGCAAAUGCA   418 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X3, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014777361.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:381   CAGGUGCAGGUGCAAAUGCA   400 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X13, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014763729.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:414   CAGGUGCAGGUGCAAAUGCA   433 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X5, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006590360.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:532   CAGGUGCAGGUGCAAAUGCA   551 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X15, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573797.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:580   CAGGUGCAGGUGCAAAUGCA   599 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X17, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006573796.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:580   CAGGUGCAGGUGCAAAUGCA   599 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X16, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590353.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:453   CAGGUGCAGGUGCAAAUGCA   472 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X4, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573795.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:448   CAGGUGCAGGUGCAAAUGCA   467 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X10, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777352.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:471   CAGGUGCAGGUGCAAAUGCA   490 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X6, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_003517512.3	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:485   CAGGUGCAGGUGCAAAUGCA   504 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X11, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590350.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:531   CAGGUGCAGGUGCAAAUGCA   550 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X1, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573792.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:512   CAGGUGCAGGUGCAAAUGCA   531 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X1, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006573793.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:514   CAGGUGCAGGUGCAAAUGCA   533 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X5, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006590351.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:546   CAGGUGCAGGUGCAAAUGCA   565 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X2, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006573794.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:525   CAGGUGCAGGUGCAAAUGCA   544 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X4, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777353.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:526   CAGGUGCAGGUGCAAAUGCA   545 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X7, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777357.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:539   CAGGUGCAGGUGCAAAUGCA   558 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X9, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006573791.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:540   CAGGUGCAGGUGCAAAUGCA   559 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X3, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777355.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:554   CAGGUGCAGGUGCAAAUGCA   573 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X8, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_014777350.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||||||| targets:595   CAGGUGCAGGUGCAAAUGCA   614 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X2, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_003536185.3	ncRNA:20   UUUCACGUCCACGUUUACGU   1   **=||||||||||||||||| targets:262   CCGGUGCAGGUGCAAAUGCA   281 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100798639 (LOC100798639), transcript variant X2, mRNA	uncharacterized LOC100798639(LOC100798639)	coding protein	psRNATarget
XM_006589226.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   **=||||||||||||||||| targets:298   CCGGUGCAGGUGCAAAUGCA   317 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100798639 (LOC100798639), transcript variant X3, mRNA	uncharacterized LOC100798639(LOC100798639)	coding protein	psRNATarget
XM_006589225.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   **=||||||||||||||||| targets:431   CCGGUGCAGGUGCAAAUGCA   450 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100798639 (LOC100798639), transcript variant X1, mRNA	uncharacterized LOC100798639(LOC100798639)	coding protein	psRNATarget
XM_014763740.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   **=||||||||||||||||| targets:399   UUGGUGCAGGUGCAAAUGCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X24, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763736.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   **=||||||||||||||||| targets:399   UUGGUGCAGGUGCAAAUGCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X20, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014763734.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   **=||||||||||||||||| targets:399   UUGGUGCAGGUGCAAAUGCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X18, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_006590354.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   **=||||||||||||||||| targets:399   UUGGUGCAGGUGCAAAUGCA   418 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100811424 (LOC100811424), transcript variant X7, mRNA	uncharacterized LOC100811424(LOC100811424)	coding protein	psRNATarget
XM_014777363.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   **=||||||||||||||||| targets:449   UUGGUGCAGGUGCAAAUGCA   468 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100799306 (LOC100799306), transcript variant X14, mRNA	uncharacterized LOC100799306(LOC100799306)	coding protein	psRNATarget
XM_006574473.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|=||||||||||||=|||| targets:579   CAGGUGCAGGUGCAAGUGCA   598 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor MYB12-like (LOC100814275), mRNA	transcription factor MYB12-like(LOC100814275)	coding protein	psRNATarget
XM_006605925.2	ncRNA:20   UUUCACGUCCACGUUUACGU   1   *|||*||||||||||=|||| targets:369   UAAGGGCAGGUGCAAGUGCA   388 Target Full Sequence	2.5	PREDICTED: Glycine max zinc finger protein 4-like (LOC100811125), mRNA	zinc finger protein 4-like(LOC100811125)	coding protein	psRNATarget
XM_014762313.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   |||||*||*||||||||||| targets:243   AAAGUUCAAGUGCAAAUGCA   262 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106794650 (LOC106794650), mRNA	uncharacterized LOC106794650(LOC106794650)	coding protein	psRNATarget
XM_014771454.1	ncRNA:20   UUUCACGUCCACGUUUACGU   1   |||||*||*||||||||||| targets:244   AAAGUUCAAGUGCAAAUGCA   263 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106797229 (LOC106797229), mRNA	uncharacterized LOC106797229(LOC106797229)	coding protein	psRNATarget

Reference

1	PMID:21504877 "MicroRNAs in the shoot apical meristem of soybean"; Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL; J Exp Bot. 62:2495-2506(2011).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).
3	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).