Search result

BaseInfo

ncRNA ID	gma-miR172k
Species	Glycine max
Class	miRNA
Genome position	chr12:33560621-33560754 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	104 - UGAAUCUUGAUGAUGCUGCAU - 124
Stem-loop(if miRNA)	UUGUUU  G         C             A   ----     AA       G  A UAU  U   AU       GC GAUGUAGCA CAUCAAGAUUCAC UGC    AAAUG  GGUGGGU GG C   GA GCA  C       || ||||||||| ||||||||||||| |||    |||||  ||||||| || |   || |||  U       CG CUACGUCGU GUAGUUCUAAGUG GUG    UUUAU  UUACCUA CC G   CU CGU  A AAAUAC  A         A             -   GUUU     GG       A  - --U  -   GA
Stem-loop sequence	UUGUUUGCGGAUGUAGCACCAUCAAGAUUCACAUGCAAAUGAAGGUGGGUGGGACUAUGAUGCAAUCUAAGUGCUCUGCCAAUCCAUUGGUAUUUUUUGGUGGUGAAUCUUGAUGAUGCUGCAUCAGCCAUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JA894828.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   |||=||||||||||||||||| targets:21   AUGUAGCAUCAUCAAGAUUCA   41 Target Full Sequence	1.0	Sequence 145 from Patent WO2011067745	NA	coding protein	psRNATarget
KT031071.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   ||||||||||||||=|||||= targets:1178   AUGCAGCAUCAUCAGGAUUCG   1198 Target Full Sequence	2.5	Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_014765905.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   ||||||||||||||=|||||= targets:1398   AUGCAGCAUCAUCAGGAUUCG   1418 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X5, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765903.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   ||||||||||||||=|||||= targets:1475   AUGCAGCAUCAUCAGGAUUCG   1495 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X4, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765900.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   ||||||||||||||=|||||= targets:1535   AUGCAGCAUCAUCAGGAUUCG   1555 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765901.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   ||||||||||||||=|||||= targets:1590   AUGCAGCAUCAUCAGGAUUCG   1610 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_003519962.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   ||||||||||||||=|||||= targets:1650   AUGCAGCAUCAUCAGGAUUCG   1670 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_003535131.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   ||||||||||||||=|||||= targets:1643   AUGCAGCAUCAUCAGGAUUCG   1663 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100783626), mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100783626)	coding protein	psRNATarget
KT031086.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1310   CUGCAGCAUCAUCAGGAUUCU   1330 Target Full Sequence	2.5	Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_003520593.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1545   CUGCAGCAUCAUCAGGAUUCC   1565 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100808212), mRNA	floral homeotic protein APETALA 2-like(LOC100808212)	coding protein	psRNATarget
XM_006597244.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1749   CUGCAGCAUCAUCAGGAUUCU   1769 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7(LOC100796271)	coding protein	psRNATarget
XM_003546994.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1798   CUGCAGCAUCAUCAGGAUUCU   1818 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC100796271)	coding protein	psRNATarget
XM_003540705.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1764   CUGCAGCAUCAUCAGGAUUCU   1784 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X4, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592181.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1768   CUGCAGCAUCAUCAGGAUUCU   1788 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006573580.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1814   CUGCAGCAUCAUCAGGAUUCC   1834 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_014763839.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1820   CUGCAGCAUCAUCAGGAUUCC   1840 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100786333), mRNA	floral homeotic protein APETALA 2-like(LOC100786333)	coding protein	psRNATarget
XM_003517264.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1822   CUGCAGCAUCAUCAGGAUUCC   1842 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_006573579.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1829   CUGCAGCAUCAUCAGGAUUCC   1849 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_006592180.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1810   CUGCAGCAUCAUCAGGAUUCU   1830 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592179.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1813   CUGCAGCAUCAUCAGGAUUCU   1833 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006594938.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1855   CUGCAGCAUCAUCAGGAUUCU   1875 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_003541960.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1901   CUGCAGCAUCAUCAGGAUUCU   1921 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_006594937.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:2016   CUGCAGCAUCAUCAGGAUUCU   2036 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_014772192.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:2031   CUGCAGCAUCAUCAGGAUUCC   2051 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100797238)	coding protein	psRNATarget
XM_003554309.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:2050   CUGCAGCAUCAUCAGGAUUCC   2070 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100797238)	coding protein	psRNATarget
XM_003550003.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||||*|||* targets:1969   CUGCAGCAUCAUCAAGUUUCC   1989 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100792442)	coding protein	psRNATarget
XM_006600875.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||||*|||* targets:1972   CUGCAGCAUCAUCAAGUUUCC   1992 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100792442)	coding protein	psRNATarget
XM_006579822.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||||*|||* targets:1971   CUGCAGCAUCAUCAAGUUUCC   1991 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X4, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_003524595.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||||*|||* targets:1975   CUGCAGCAUCAUCAAGUUUCC   1995 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014775567.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||||*|||* targets:1990   CUGCAGCAUCAUCAAGUUUCC   2010 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014775566.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||||*|||* targets:1994   CUGCAGCAUCAUCAAGUUUCC   2014 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).