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BaseInfo

ncRNA ID	gma-miR5039
Species	Glycine max
Class	miRNA
Genome position	chr12:32718937-32719087 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	61 - CCCUUUUUUAAUCGUUGCAUG - 81
Stem-loop(if miRNA)	UUACACAUUCA   A  AAAAUGACUAUUUAUCCAAAAUAUAAUUUAAUAUUCAUUUUCUCCCUUUUUUAAUCGUUGCAU            GGU CA                                                               G            ||| ||                                                               C            GUU UU                                                               A -----------   -  AUAUUAAAUUAGAAGUAGAAAAGAGGAAAAAAAAUUAGCAAUGUUCACUAAUAACAUUACAAU
Stem-loop sequence	UUACACAUUCAGGUACAAAAAUGACUAUUUAUCCAAAAUAUAAUUUAAUAUUCAUUUUCUCCCUUUUUUAAUCGUUGCAUGCAUAACAUUACAAUAAUCACUUGUAACGAUUAAAAAAAAGGAGAAAAGAUGAAGAUUAAAUUAUAUUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014778394.1	ncRNA:21   GUACGUUGCUAAUUUUUUCCC   1   |*|||||*|*||||||||||| targets:1051   CUUGCAAAGUUUAAAAAAGGG   1071 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like (LOC100809589), mRNA	uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like(LOC100809589)	coding protein	psRNATarget
XM_014775900.1	ncRNA:21   GUACGUUGCUAAUUUUUUCCC   1   |*|||||*|*||||||||||| targets:1194   CUUGCAAAGUUUAAAAAAGGG   1214 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like (LOC100817882), mRNA	uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like(LOC100817882)	coding protein	psRNATarget
XM_006600600.2	ncRNA:21   GUACGUUGCUAAUUUUUUCCC   1   ||||*=|=||||||||||||| targets:1757   CAUGAGAUGAUUAAAAAAGGG   1777 Target Full Sequence	3.0	PREDICTED: Glycine max probable mitochondrial chaperone bcs1 (LOC100798981), mRNA	probable mitochondrial chaperone bcs1(LOC100798981)	coding protein	psRNATarget

Reference

1	PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome"; Radwan O, Liu Y, Clough SJ; Mol Plant Microbe Interact. 24:958-972(2011).