| ncRNA ID | ath-miR8178 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr4:18087205-18087442 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 81 - UAACAGAGUAAUUGUACAGUG - 101 |
| Stem-loop(if miRNA) |
A - ACUUU UAUUGGAGUACAUAGGCC GUUUAGAUUAAUUCUAUUUGUUCGGUUUAGUAUUGGUUAGAUCUUAUACCACACUUGUAUAUAACAGAGUAAUUGUACAGUGUAAUCAUUA GA C |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || U AUAACCUCAUGUAUCCGG CAAAUCUAAUUAAGAUAAACAAGCCAAAUCAUAACCAAUCUAGAAUAUGGUGUGAACAUAUAUUGUCUCAUUAACAUGUCACAUUAGUAAU CU C C U ACUUA |
| Stem-loop sequence | UAUUGGAGUACAUAGGCCAGUUUAGAUUAAUUCUAUUUGUUCGGUUUAGUAUUGGUUAGAUCUUAUACCACACUUGUAUAUAACAGAGUAAUUGUACAGUGUAAUCAUUAGAACUUUCUCAUUCAUCUUAAUGAUUACACUGUACAAUUACUCUGUUAUAUACAAGUGUGGUAUAAGAUCUAACCAAUACUAAACCGAACAAAUAGAAUUAAUCUAAACCGGCCUAUGUACUCCAAUA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_179848.1 |
|
3.0 | Arabidopsis thaliana lipoprotein (DUF1264) mRNA | lipoprotein (DUF1264)(AT2G31985) | coding protein | psRNATarget | |||||||||
| AK118685.1 |
|
3.0 | Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL19-95-G13 | NA | coding protein | psRNATarget | |||||||||
| AK117989.1 |
|
3.0 | Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL19-19-D18 | NA | coding protein | psRNATarget |
| 1 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |