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BaseInfo

ncRNA ID	gma-miR171m
Species	Glycine max
Class	miRNA
Genome position	chr12:8398817-8398949 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	88 - UUGAGCCGCGUCAAUAUCUCA - 108
Stem-loop(if miRNA)	---    -  UU UAU    CA   AUCA             C       U   -G        AAGAU    GAAG UG  G   GAAG  CAA    AGGUAUUGGCGUG CUCAAUU GAA  ACAUGGUU     G    |||| ||  |   ||||  |||    ||||||||||||| ||||||| |||  ||||||||    CUUC AC  U   CUUC  GUU    UCUAUAACUGCGC GAGUUAA UUU  UGUACCGA     A CUA    U  CU --U    AC   CUAC             C       U   AA        CCAAA
Stem-loop sequence	GAAGUGUUGUAUGAAGCACAAAUCAAGGUAUUGGCGUGCCUCAAUUUGAAGACAUGGUUAAGAUGAAAACCAGCCAUGUAAUUUUAAUUGAGCCGCGUCAAUAUCUCAUCUUGCACUUCUUUCCAUCUUCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410514.1	ncRNA:21   ACUCUAUAACUGCGCCGAGUU   1   ||||||||||||||||||||| targets:11   UGAGAUAUUGACGCGGCUCAA   31 Target Full Sequence	0.0	Sequence 8639 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242644.1	ncRNA:21   ACUCUAUAACUGCGCCGAGUU   1   ||||||||||||||||||||| targets:11   UGAGAUAUUGACGCGGCUCAA   31 Target Full Sequence	0.0	Sequence 8639 from Patent EP2985353	NA	coding protein	psRNATarget
JB170975.1	ncRNA:21   ACUCUAUAACUGCGCCGAGUU   1   ||||||||||||||||||||| targets:11   UGAGAUAUUGACGCGGCUCAA   31 Target Full Sequence	0.0	Sequence 8639 from Patent EP2559767	NA	coding protein	psRNATarget
XM_006573169.2	ncRNA:21   ACUCUAUAACUGCGCCGAGUU   1   ||=|||||||=|||||||||| targets:1751   UGGGAUAUUGGCGCGGCUCAA   1771 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 27 (LOC100792973), mRNA	scarecrow-like protein 27(LOC100792973)	coding protein	psRNATarget
XM_014773107.1	ncRNA:21   ACUCUAUAACUGCGCCGAGUU   1   *|=|||||||=|||||||||| targets:1513   CGGGAUAUUGGCGCGGCUCAA   1533 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100805945), mRNA	scarecrow-like protein 6(LOC100805945)	coding protein	psRNATarget
XM_006576371.2	ncRNA:21   ACUCUAUAACUGCGCCGAGUU   1   *|=|||||||=|||||||||| targets:1630   AGGGAUAUUGGCGCGGCUCAA   1650 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100794596), mRNA	scarecrow-like protein 6(LOC100794596)	coding protein	psRNATarget
XM_003516392.3	ncRNA:21   ACUCUAUAACUGCGCCGAGUU   1   *|=|||||||=|||||||||| targets:1780   AGGGAUAUUGGCGCGGCUCAA   1800 Target Full Sequence	2.5	PREDICTED: Glycine max scarecrow-like protein 6 (LOC100801785), mRNA	scarecrow-like protein 6(LOC100801785)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).