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BaseInfo

ncRNA ID	gma-miR172a
Species	Glycine max
Class	miRNA
Genome position	chr12:6110704-6110862 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	20 - AGAAUCUUGAUGAUGCUGCAU - 40
Stem-loop(if miRNA)	UUAAC       AUUU  G                     A  -- G    -C  AG     --  G   G  UUGAU   AU      AGUCGUU    GC GAUGUAGCAUCAUCAAGAUUC CA  U CAAG  GC  GUGGU  GG UGG AC     GCA  C      |||||||    || ||||||||||||||||||||| ||  | ||||  ||  |||||  || ||| ||     |||  U      UCAGCAA    CG CUACGUCGUAGUAGUUCUAAG GU  A GUUU  UG  UACCG  CC ACC UG     CGU  A -CACU       AUAC  A                     A  CA G    UC  GA     AA  G   G  ----U   GA
Stem-loop sequence	UUAACAGUCGUUAUUUGCGGAUGUAGCAUCAUCAAGAUUCACAUGCAAGCGCAGGUGGUGGGUGGGACUUGAUGCAAUCUAAGUGCUGUGCCAGCCAAGCCAUAGGUCUUUUGGAACUGAGAAUCUUGAUGAUGCUGCAUCAGCCAUAAACGACUUCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KT031086.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1310   CUGCAGCAUCAUCAGGAUUCU   1330 Target Full Sequence	1.5	Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_006597244.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1749   CUGCAGCAUCAUCAGGAUUCU   1769 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7(LOC100796271)	coding protein	psRNATarget
XM_003546994.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1798   CUGCAGCAUCAUCAGGAUUCU   1818 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC100796271)	coding protein	psRNATarget
XM_003540705.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1764   CUGCAGCAUCAUCAGGAUUCU   1784 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X4, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592181.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1768   CUGCAGCAUCAUCAGGAUUCU   1788 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592180.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1810   CUGCAGCAUCAUCAGGAUUCU   1830 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592179.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1813   CUGCAGCAUCAUCAGGAUUCU   1833 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006594938.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1855   CUGCAGCAUCAUCAGGAUUCU   1875 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_003541960.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1901   CUGCAGCAUCAUCAGGAUUCU   1921 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_006594937.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:2016   CUGCAGCAUCAUCAGGAUUCU   2036 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
JA894828.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |||=||||||||||||||||* targets:21   AUGUAGCAUCAUCAAGAUUCA   41 Target Full Sequence	2.0	Sequence 145 from Patent WO2011067745	NA	coding protein	psRNATarget
KT031071.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1178   AUGCAGCAUCAUCAGGAUUCG   1198 Target Full Sequence	2.5	Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_014765905.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1398   AUGCAGCAUCAUCAGGAUUCG   1418 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X5, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765903.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1475   AUGCAGCAUCAUCAGGAUUCG   1495 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X4, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765900.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1535   AUGCAGCAUCAUCAGGAUUCG   1555 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765901.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1590   AUGCAGCAUCAUCAGGAUUCG   1610 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_003519962.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1650   AUGCAGCAUCAUCAGGAUUCG   1670 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_003535131.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1643   AUGCAGCAUCAUCAGGAUUCG   1663 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100783626), mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100783626)	coding protein	psRNATarget
XM_003520593.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1545   CUGCAGCAUCAUCAGGAUUCC   1565 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100808212), mRNA	floral homeotic protein APETALA 2-like(LOC100808212)	coding protein	psRNATarget
XM_006573580.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1814   CUGCAGCAUCAUCAGGAUUCC   1834 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_014763839.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1820   CUGCAGCAUCAUCAGGAUUCC   1840 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100786333), mRNA	floral homeotic protein APETALA 2-like(LOC100786333)	coding protein	psRNATarget
XM_003517264.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1822   CUGCAGCAUCAUCAGGAUUCC   1842 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_006573579.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1829   CUGCAGCAUCAUCAGGAUUCC   1849 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_014772192.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:2031   CUGCAGCAUCAUCAGGAUUCC   2051 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100797238)	coding protein	psRNATarget
XM_003554309.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:2050   CUGCAGCAUCAUCAGGAUUCC   2070 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100797238)	coding protein	psRNATarget
XM_003550003.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||||*|||* targets:1969   CUGCAGCAUCAUCAAGUUUCC   1989 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100792442)	coding protein	psRNATarget
XM_006600875.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||||*|||* targets:1972   CUGCAGCAUCAUCAAGUUUCC   1992 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100792442)	coding protein	psRNATarget
XM_006579822.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||||*|||* targets:1971   CUGCAGCAUCAUCAAGUUUCC   1991 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X4, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_003524595.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||||*|||* targets:1975   CUGCAGCAUCAUCAAGUUUCC   1995 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014775567.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||||*|||* targets:1990   CUGCAGCAUCAUCAAGUUUCC   2010 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014775566.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||||*|||* targets:1994   CUGCAGCAUCAUCAAGUUUCC   2014 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014776740.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |||=|*|*||||||||||||| targets:1789   AUGUACCUUCAUCAAGAUUCU   1809 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC106798964), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC106798964)	coding protein	psRNATarget
XM_006592461.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |||=|*|*||||||||||||| targets:1898   AUGUACCUUCAUCAAGAUUCU   1918 Target Full Sequence	3.0	PREDICTED: Glycine max receptor-like serine/threonine-protein kinase SD1-8 (LOC100810407), mRNA	receptor-like serine/threonine-protein kinase SD1-8(LOC100810407)	coding protein	psRNATarget
XM_014776739.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |||=|*|*||||||||||||| targets:1893   AUGUACCUUCAUCAAGAUUCU   1913 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC106798964), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC106798964)	coding protein	psRNATarget
XM_006582159.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |||=|*|*||||||||||||| targets:2146   AUGUAUCUUCAUCAAGAUUCU   2166 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100808807), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100808807)	coding protein	psRNATarget
XM_006582158.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |||=|*|*||||||||||||| targets:2164   AUGUAUCUUCAUCAAGAUUCU   2184 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100808807), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100808807)	coding protein	psRNATarget
XM_006582149.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1984   CUGUAUCUUCAUCAAGAUUCU   2004 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100790436), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100790436)	coding protein	psRNATarget
XM_006578428.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1955   CUGUACCUUCAUCAAGAUUCU   1975 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100819820), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100819820)	coding protein	psRNATarget
XM_006582148.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1993   CUGUAUCUUCAUCAAGAUUCU   2013 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100790436), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100790436)	coding protein	psRNATarget
XM_003526117.3	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1929   UUGUAUCUUCAUCAAGAUUCU   1949 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100810955), mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100810955)	coding protein	psRNATarget
XM_006578427.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:2046   CUGUACCUUCAUCAAGAUUCU   2066 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100819820), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100819820)	coding protein	psRNATarget
XM_006593085.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1877   CUGUAUCUUCAUCAAGAUUCU   1897 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100812007 (LOC100812007), mRNA	uncharacterized LOC100812007(LOC100812007)	coding protein	psRNATarget
XM_006593085.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:4448   CUGUAUCUUCAUCAAGAUUCU   4468 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100812007 (LOC100812007), mRNA	uncharacterized LOC100812007(LOC100812007)	coding protein	psRNATarget
XM_014777073.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:2069   UUGUAUCUUCAUCAAGAUUCU   2089 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100812022 (LOC100812022), mRNA	uncharacterized LOC100812022(LOC100812022)	coding protein	psRNATarget
XM_014777073.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:4577   UUGUAUCUUCAUCAAGAUUCU   4597 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100812022 (LOC100812022), mRNA	uncharacterized LOC100812022(LOC100812022)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).