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BaseInfo

ncRNA ID gma-miR172e
Species Glycine max
Class miRNA
Genome position chr11:35957808-35957960 [-]
Reference genome v1.0
Source miRBase
Length 24
Mature sequence(if miRNA) 17 - GGAAUCUUGAUGAUGCUGCAGCAG - 40
Stem-loop(if miRNA) AAAAC     CUGU    C G  G                A  -   UUU       AU     U     A   G UCC
     AGUCA    UUGC G UG AGCAUCAUCAAGAUUC CA AGC   AGGGGGC  UAAUU GUUUG GGU G   C
     |||||    |||| | || |||||||||||||||| || |||   |||||||  ||||| ||||| ||| |
     UCAGU    AACG C AC UCGUAGUAGUUCUAAG GU UCG   UUUCCCG  AUUAA CAAAC CUA U   U
-AUAA     AAAU    A G  G                G  A   --U       --     C     -   G UAU
Stem-loop sequence AAAACAGUCACUGUUUGCCGGUGGAGCAUCAUCAAGAUUCACAAGCUUUAGGGGGCAUUAAUUUGUUUGAGGUGGUCCCUUAUUGAUCCAAACCAAUUAGCCCUUUUGCUAUGGGAAUCUUGAUGAUGCUGCAGCAGCAAUAAAUGACUAAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006573580.2
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||=||||||
targets:1811   CUGCUGCAGCAUCAUCAGGAUUCC   1834

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X3, mRNA floral homeotic protein APETALA 2-like(LOC100801975) coding protein psRNATarget
XM_014763839.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||=||||||
targets:1817   CUGCUGCAGCAUCAUCAGGAUUCC   1840

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100786333), mRNA floral homeotic protein APETALA 2-like(LOC100786333) coding protein psRNATarget
XM_003517264.3
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||=||||||
targets:1819   CUGCUGCAGCAUCAUCAGGAUUCC   1842

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC100801975) coding protein psRNATarget
XM_006573579.2
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||=||||||
targets:1826   CUGCUGCAGCAUCAUCAGGAUUCC   1849

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC100801975) coding protein psRNATarget
XM_003550003.3
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||||*||||
targets:1966   CUGCUGCAGCAUCAUCAAGUUUCC   1989

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC100792442) coding protein psRNATarget
XM_006600875.2
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||||*||||
targets:1969   CUGCUGCAGCAUCAUCAAGUUUCC   1992

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC100792442) coding protein psRNATarget
XM_006579822.2
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||||*||||
targets:1968   CUGCUGCAGCAUCAUCAAGUUUCC   1991

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X4, mRNA floral homeotic protein APETALA 2-like(LOC100794096) coding protein psRNATarget
XM_003524595.3
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||||*||||
targets:1972   CUGCUGCAGCAUCAUCAAGUUUCC   1995

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X3, mRNA floral homeotic protein APETALA 2-like(LOC100794096) coding protein psRNATarget
XM_014775567.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||||*||||
targets:1987   CUGCUGCAGCAUCAUCAAGUUUCC   2010

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC100794096) coding protein psRNATarget
XM_014775566.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||||*||||
targets:1991   CUGCUGCAGCAUCAUCAAGUUUCC   2014

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC100794096) coding protein psRNATarget
XM_003520593.3
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  ||*||||||||||||||=||||||
targets:1542   CUACUGCAGCAUCAUCAGGAUUCC   1565

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100808212), mRNA floral homeotic protein APETALA 2-like(LOC100808212) coding protein psRNATarget
XM_014772192.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  ||*||||||||||||||=||||||
targets:2028   CUACUGCAGCAUCAUCAGGAUUCC   2051

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC100797238) coding protein psRNATarget
XM_003554309.3
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  ||*||||||||||||||=||||||
targets:2047   CUACUGCAGCAUCAUCAGGAUUCC   2070

1.5 PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC100797238) coding protein psRNATarget
JA894828.1
ncRNA:24   GACG---ACGUCGUAGUAGUUCUAAGG   1
  =|||---||=||||||||||||||||*
targets:15   UUGCGGAUGUAGCAUCAUCAAGAUUCA   41

2.0 Sequence 145 from Patent WO2011067745 NA coding protein psRNATarget
KT031086.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||=|||||=
targets:1307   CUGCUGCAGCAUCAUCAGGAUUCU   1330

2.5 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds NA coding protein psRNATarget
XM_003540705.3
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||=|||||=
targets:1761   CUGCUGCAGCAUCAUCAGGAUUCU   1784

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X4, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100788303) coding protein psRNATarget
XM_006592181.2
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||=|||||=
targets:1765   CUGCUGCAGCAUCAUCAGGAUUCU   1788

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X3, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100788303) coding protein psRNATarget
XM_006592180.2
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||=|||||=
targets:1807   CUGCUGCAGCAUCAUCAGGAUUCU   1830

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100788303) coding protein psRNATarget
XM_006592179.2
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |||||||||||||||||=|||||=
targets:1810   CUGCUGCAGCAUCAUCAGGAUUCU   1833

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100788303) coding protein psRNATarget
XM_006597244.2
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  ||*||||||||||||||=|||||=
targets:1746   CUACUGCAGCAUCAUCAGGAUUCU   1769

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7(LOC100796271) coding protein psRNATarget
XM_003546994.3
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  ||*||||||||||||||=|||||=
targets:1795   CUACUGCAGCAUCAUCAGGAUUCU   1818

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7(LOC100796271) coding protein psRNATarget
XM_006594938.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  ||*||||||||||||||=|||||=
targets:1852   CUACUGCAGCAUCAUCAGGAUUCU   1875

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X3, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100777102) coding protein psRNATarget
XM_003541960.2
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  ||*||||||||||||||=|||||=
targets:1898   CUACUGCAGCAUCAUCAGGAUUCU   1921

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100777102) coding protein psRNATarget
XM_006594937.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  ||*||||||||||||||=|||||=
targets:2013   CUACUGCAGCAUCAUCAGGAUUCU   2036

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC100777102) coding protein psRNATarget
XM_003535131.3
ncRNA:24   GACG-------ACGUCGUAGUAGUUCUAAGG   1
  =|||-------|||||||||||||=|||||*
targets:1633   UUGCAACCAAAUGCAGCAUCAUCAGGAUUCG   1663

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100783626), mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100783626) coding protein psRNATarget
KT031071.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |***|||||||||||||=|||||*
targets:1175   CAAAUGCAGCAUCAUCAGGAUUCG   1198

2.5 Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds NA coding protein psRNATarget
XM_014765905.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |***|||||||||||||=|||||*
targets:1395   CAAAUGCAGCAUCAUCAGGAUUCG   1418

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X5, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100776138) coding protein psRNATarget
XM_014765903.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |***|||||||||||||=|||||*
targets:1472   CAAAUGCAGCAUCAUCAGGAUUCG   1495

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X4, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100776138) coding protein psRNATarget
XM_014765900.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |***|||||||||||||=|||||*
targets:1532   CAAAUGCAGCAUCAUCAGGAUUCG   1555

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X2, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100776138) coding protein psRNATarget
XM_014765901.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |***|||||||||||||=|||||*
targets:1587   CAAAUGCAGCAUCAUCAGGAUUCG   1610

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X3, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100776138) coding protein psRNATarget
XM_003519962.3
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  |***|||||||||||||=|||||*
targets:1647   CAAAUGCAGCAUCAUCAGGAUUCG   1670

2.5 PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X1, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC100776138) coding protein psRNATarget
XM_014776734.1
ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1
  ||*=||=|*|*|||||||||||||
targets:1965   CUUUUGUACCUUCAUCAAGAUUCC   1988

3.0 PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100807748), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100807748) coding protein psRNATarget

Reference

1 PMID:19084500
"Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules";
Wang Y, Li P, Cao X, Wang X, Zhang A, Li X;
Biochem Biophys Res Commun. 378:799-803(2009).
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