Search result

BaseInfo

ncRNA ID	gma-miR319k
Species	Glycine max
Class	miRNA
Genome position	chr11:32902062-32902247 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	160 - UUGGACUGAAGGGAGCUCCCU - 180
Stem-loop(if miRNA)	UU   A                 CU  U   UG  U      UU     --  G  G   AC        U  AA        AAUUA    C AGU  AAG GAGCUUCCUUCAGUCCA  CA GGA  GG AGAGGG  UGAAU  UA CU CUG  UCAUUCAU CA  CACAAUAG     GUAU A |||  ||| |||||||||||||||||  || |||  || ||||||  |||||  || || |||  |||||||| ||  ||||||||     |||| UCA  UUC CUCGAGGGAAGUCAGGU  GU UCU  UC UUUUCC  ACUUG  AU GA GAC  AGUAAGUG GU  GUGUUAUC     UAUG U    UU   C                 UC  U   GU  -      -U     AA  G  G   GU        U  AA        ----G    G
Stem-loop sequence	AGUUUAAGAGAGCUUCCUUCAGUCCACUCAUGGAUGGGUAGAGGGUUUGAAUUAGCUGCUGACUCAUUCAUUCAAACACAAUAGAAUUAGUAUCAUGGUAUGCUAUUGUGAAUGUGUGAAUGAUGCAGGAGGUAAAGUUCAUCCUUUUCUUGUCUUUGCUUGGACUGAAGGGAGCUCCCUUUUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ242604.1	ncRNA:21   UC--CCUCGAGGGAAGUCAGGUU   1   ||--||||||||||||||||||| targets:10   AGAAGGAGCUCCCUUCAGUCCAA   32 Target Full Sequence	2.5	Sequence 8599 from Patent EP2985353	NA	coding protein	psRNATarget
HI410474.1	ncRNA:21   UC--CCUCGAGGGAAGUCAGGUU   1   ||--||||||||||||||||||| targets:10   AGAAGGAGCUCCCUUCAGUCCAA   32 Target Full Sequence	2.5	Sequence 8599 from Patent EP2074227	NA	coding protein	psRNATarget
JB170935.1	ncRNA:21   UC--CCUCGAGGGAAGUCAGGUU   1   ||--||||||||||||||||||| targets:10   AGAAGGAGCUCCCUUCAGUCCAA   32 Target Full Sequence	2.5	Sequence 8599 from Patent EP2559767	NA	coding protein	psRNATarget
BT098668.1	ncRNA:21   UC--CCUCGAGGGAAGUCAGGUU   1   ||--||||||||||||||||||| targets:277   AGAAGGAGCUCCCUUCAGUCCAA   299 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-12F22 unknown mRNA	NA	coding protein	psRNATarget
XM_003526306.3	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   ***||||||||||||*||||| targets:1260   UCAGAGCUCCCUUCACUCCAA   1280 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100805804)	coding protein	psRNATarget
XM_006582324.2	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   ***||||||||||||*||||| targets:1260   UCAGAGCUCCCUUCACUCCAA   1280 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100805804)	coding protein	psRNATarget
XM_003523865.3	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   ***||||||||||||*||||| targets:1323   UCAGAGCUCCCUUCACUCCAA   1343 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100792349)	coding protein	psRNATarget
XM_006578333.2	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   ***||||||||||||*||||| targets:1323   UCAGAGCUCCCUUCACUCCAA   1343 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100792349)	coding protein	psRNATarget

Reference

1

PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).