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BaseInfo

ncRNA ID	gma-miR172f
Species	Glycine max
Class	miRNA
Genome position	chr11:16934086-16934218 [+]
Reference genome	v1.0
Source	miRBase
Length	20
Mature sequence(if miRNA)	109 - AGAAUCUUGAUGAUGCUGCA - 128
Stem-loop(if miRNA)	G                     A   --G    -C  AG     --G   -  G  U   AU  AA GC GAUGUAGCAUCAUCAAGAUUC CAU   CAAA  GC  GUGGU   GGU GG AC GUG  GC  U || ||||||||||||||||||||| |||   ||||  ||  |||||   ||| || || |||  ||  C CG CUACGUCGUAGUAGUUCUAAG GUG   GUUU  UG  UACCG   CCA CC UG CAU  UG  U   A                     A   AAG    UC  GA     AAA   A  G  U   CG  AA
Stem-loop sequence	GCGGAUGUAGCAUCAUCAAGAUUCACAUGCAAACGCAGGUGGUGGGUGGGACUGUGAUGCAAUCUAAGUGCUACUGUGCCAACCAAAGCCAUAGGUCUUUUGGAAGUGAGAAUCUUGAUGAUGCUGCAUCAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KT031086.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1311   UGCAGCAUCAUCAGGAUUCU   1330 Target Full Sequence	1.5	Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_006597244.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1750   UGCAGCAUCAUCAGGAUUCU   1769 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7(LOC100796271)	coding protein	psRNATarget
XM_003546994.3	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1799   UGCAGCAUCAUCAGGAUUCU   1818 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC100796271)	coding protein	psRNATarget
XM_003540705.3	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1765   UGCAGCAUCAUCAGGAUUCU   1784 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X4, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592181.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1769   UGCAGCAUCAUCAGGAUUCU   1788 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592180.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1811   UGCAGCAUCAUCAGGAUUCU   1830 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592179.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1814   UGCAGCAUCAUCAGGAUUCU   1833 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006594938.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1856   UGCAGCAUCAUCAGGAUUCU   1875 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_003541960.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1902   UGCAGCAUCAUCAGGAUUCU   1921 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_006594937.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:2017   UGCAGCAUCAUCAGGAUUCU   2036 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
JA894828.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=||||||||||||||||* targets:22   UGUAGCAUCAUCAAGAUUCA   41 Target Full Sequence	2.0	Sequence 145 from Patent WO2011067745	NA	coding protein	psRNATarget
KT031071.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1179   UGCAGCAUCAUCAGGAUUCG   1198 Target Full Sequence	2.5	Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_014765905.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1399   UGCAGCAUCAUCAGGAUUCG   1418 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X5, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765903.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1476   UGCAGCAUCAUCAGGAUUCG   1495 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X4, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765900.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1536   UGCAGCAUCAUCAGGAUUCG   1555 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765901.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1591   UGCAGCAUCAUCAGGAUUCG   1610 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_003519962.3	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1651   UGCAGCAUCAUCAGGAUUCG   1670 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_003520593.3	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1546   UGCAGCAUCAUCAGGAUUCC   1565 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100808212), mRNA	floral homeotic protein APETALA 2-like(LOC100808212)	coding protein	psRNATarget
XM_003535131.3	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1644   UGCAGCAUCAUCAGGAUUCG   1663 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100783626), mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100783626)	coding protein	psRNATarget
XM_006573580.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1815   UGCAGCAUCAUCAGGAUUCC   1834 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_014763839.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1821   UGCAGCAUCAUCAGGAUUCC   1840 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100786333), mRNA	floral homeotic protein APETALA 2-like(LOC100786333)	coding protein	psRNATarget
XM_003517264.3	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1823   UGCAGCAUCAUCAGGAUUCC   1842 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_006573579.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1830   UGCAGCAUCAUCAGGAUUCC   1849 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_014772192.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:2032   UGCAGCAUCAUCAGGAUUCC   2051 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100797238)	coding protein	psRNATarget
XM_003554309.3	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:2051   UGCAGCAUCAUCAGGAUUCC   2070 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100797238)	coding protein	psRNATarget
XM_003550003.3	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||||*|||* targets:1970   UGCAGCAUCAUCAAGUUUCC   1989 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100792442)	coding protein	psRNATarget
XM_006600875.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||||*|||* targets:1973   UGCAGCAUCAUCAAGUUUCC   1992 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100792442)	coding protein	psRNATarget
XM_006579822.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||||*|||* targets:1972   UGCAGCAUCAUCAAGUUUCC   1991 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X4, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_003524595.3	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||||*|||* targets:1976   UGCAGCAUCAUCAAGUUUCC   1995 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014775567.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||||*|||* targets:1991   UGCAGCAUCAUCAAGUUUCC   2010 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014775566.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||||*|||* targets:1995   UGCAGCAUCAUCAAGUUUCC   2014 Target Full Sequence	2.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_006582149.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:1985   UGUAUCUUCAUCAAGAUUCU   2004 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100790436), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100790436)	coding protein	psRNATarget
XM_014776740.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:1790   UGUACCUUCAUCAAGAUUCU   1809 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC106798964), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC106798964)	coding protein	psRNATarget
XM_006592461.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:1899   UGUACCUUCAUCAAGAUUCU   1918 Target Full Sequence	3.0	PREDICTED: Glycine max receptor-like serine/threonine-protein kinase SD1-8 (LOC100810407), mRNA	receptor-like serine/threonine-protein kinase SD1-8(LOC100810407)	coding protein	psRNATarget
XM_006578428.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:1956   UGUACCUUCAUCAAGAUUCU   1975 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100819820), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100819820)	coding protein	psRNATarget
XM_014776739.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:1894   UGUACCUUCAUCAAGAUUCU   1913 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC106798964), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC106798964)	coding protein	psRNATarget
XM_006582148.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:1994   UGUAUCUUCAUCAAGAUUCU   2013 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100790436), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100790436)	coding protein	psRNATarget
XM_003526117.3	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:1930   UGUAUCUUCAUCAAGAUUCU   1949 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100810955), mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100810955)	coding protein	psRNATarget
XM_006578427.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:2047   UGUACCUUCAUCAAGAUUCU   2066 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100819820), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100819820)	coding protein	psRNATarget
XM_006582159.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:2147   UGUAUCUUCAUCAAGAUUCU   2166 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100808807), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100808807)	coding protein	psRNATarget
XM_006582158.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:2165   UGUAUCUUCAUCAAGAUUCU   2184 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100808807), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100808807)	coding protein	psRNATarget
XM_006593085.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:1878   UGUAUCUUCAUCAAGAUUCU   1897 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100812007 (LOC100812007), mRNA	uncharacterized LOC100812007(LOC100812007)	coding protein	psRNATarget
XM_006593085.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:4449   UGUAUCUUCAUCAAGAUUCU   4468 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100812007 (LOC100812007), mRNA	uncharacterized LOC100812007(LOC100812007)	coding protein	psRNATarget
XM_014777073.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:2070   UGUAUCUUCAUCAAGAUUCU   2089 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100812022 (LOC100812022), mRNA	uncharacterized LOC100812022(LOC100812022)	coding protein	psRNATarget
XM_014777073.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   ||=|*|*||||||||||||| targets:4578   UGUAUCUUCAUCAAGAUUCU   4597 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100812022 (LOC100812022), mRNA	uncharacterized LOC100812022(LOC100812022)	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).