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BaseInfo

ncRNA ID	gma-miR828a
Species	Glycine max
Class	miRNA
Genome position	chr11:9033033-9033145 [+]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	11 - UCUUGCUCAAAUGAGUAUUCCA - 32
Stem-loop(if miRNA)	UUG       U    C            UC  A  -ACAGUC   UU      GAA    UAAUGUU CUUG UCAAAUGAGUAU  CA CC       ACA  UGGCAU   U    ||||||| |||| ||||||||||||  || ||       |||  ||||||   A    AUUGUAA GAAC AGUUUACUCGUA  GU GG       UGU  ACCGUG   U AAA       C    C            GA  A  AAACUCC   -C      UGU
Stem-loop sequence	UUGUAAUGUUUCUUGCUCAAAUGAGUAUUCCAACCACAGUCACAUUUGGCAUGAAUAUUGUGUGCCACUGUCCUCAAAGGAUGAGAUGCUCAUUUGACCAAGCAAUGUUAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ822980.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||||*||||||||*|||| targets:328   UGGAAUACCCAUUUGAGAAAGA   349 Target Full Sequence	2.5	Glycine max MYB transcription factor MYB74 (MYB74) mRNA, partial cds	NA	coding protein	psRNATarget
XM_003534405.3	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||||*||||||||*|||| targets:584   UGGAAUACCCAUUUGAGAAAGA   605 Target Full Sequence	2.5	PREDICTED: Glycine max myb-related protein 306 (LOC780543), mRNA	myb-related protein 306(LOC780543)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).