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BaseInfo

ncRNA ID	gma-miR1520j
Species	Glycine max
Class	miRNA
Genome position	chr11:5124264-5124439 [-]
Reference genome	v1.0
Source	miRBase
Length	24
Mature sequence(if miRNA)	6 - AAGAACGUGACACAUGACAAUCAA - 29
Stem-loop(if miRNA)	C     CA                A        U       ACC             AUA   ACUCCAUGAAAGAUG GAAUGUUGA UGUCA  UGUCACGUUCUUAUUG AUGAUGAU GUCACGU   AUGUUAUGAUUGG   UCA               A ||||||||| |||||  |||||||||||||||| |||||||| |||||||   |||||||||||||   |||               A CUUACAACU ACAGU  ACAGUGCAAGAAUAAC UACUACUG UAGUGCA   UACAAUACUAACC   UCA               A          A     AC                C        C       CAA             -AA   CUUUUAUUAUUACGU
Stem-loop sequence	GAAUGUUGACUGUCACAUGUCACGUUCUUAUUGAAUGAUGAUUGUCACGUACCAUGUUAUGAUUGGAUAUCAACUCCAUGAAAGAUGAAAUGCAUUAUUAUUUUCACUAACCAAUCAUAACAUAACACGUGAUCGUCAUCAUCCAAUAAGAACGUGACACAUGACAAUCAACAUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003518407.3	ncRNA:24   AACUAACAGUACACAGUGCAAGAA   1   ||||*|||||*||||||||||||* targets:1632   UUGACUGUCACGUGUCACGUUCUG   1655 Target Full Sequence	2.0	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100803577), mRNA	UPF0481 protein At3g47200-like(LOC100803577)	coding protein	psRNATarget
XM_006602607.2	ncRNA:24   AACUAACAGUACACAGUGCAAGAA   1   ||||*|||||*||||||||||=|| targets:531   UUGACUGUCACGUGUCACGUUUUU   554 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor TGA7-like (LOC100794752), mRNA	transcription factor TGA7-like(LOC100794752)	coding protein	psRNATarget
LQ242575.1	ncRNA:24   AACUAACAGUACACAGUGCAAGAA   1   *|||*|||=|||||||||*||||| targets:42   CUGAGUGUUAUGUGUCACAUUCUU   65 Target Full Sequence	2.5	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
HI410445.1	ncRNA:24   AACUAACAGUACACAGUGCAAGAA   1   *|||*|||=|||||||||*||||| targets:42   CUGAGUGUUAUGUGUCACAUUCUU   65 Target Full Sequence	2.5	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
JB170906.1	ncRNA:24   AACUAACAGUACACAGUGCAAGAA   1   *|||*|||=|||||||||*||||| targets:42   CUGAGUGUUAUGUGUCACAUUCUU   65 Target Full Sequence	2.5	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).