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BaseInfo

ncRNA ID	gma-miR319j
Species	Glycine max
Class	miRNA
Genome position	chr11:1374020-1374198 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	154 - UUGGACUGAAGGGAGCUCCCU - 174
Stem-loop(if miRNA)	U   A             C   CUC     U    A            A -  G   AC        A  CA        GA    A AGG AAG GAGCUCUCUUCAG CCA   AUAGG GAUA UAGGAUUUAAUU G CU CCG  UCAUUCAU CA  UGCUGAGU  AUUA U ||| ||| ||||||||||||| |||   ||||| |||| |||||||||||| | || |||  |||||||| ||  ||||||||  |||| G UCU UUC CUCGAGGGAAGUC GGU   UGUCU UUGU AUUCUAAGUUAA C GA GGC  AGUAAGUG GU  AUGACUCA  UAAU A    U   C             A   UCA     U    -            A A  G   AU        A  AA        --    A
Stem-loop sequence	AGGUAAGAGAGCUCUCUUCAGCCCACUCAUAGGUGAUAAUAGGAUUUAAUUAGCUGCCGACUCAUUCAUACACAUGCUGAGUGAAUUAAUGAAUAAUACUCAGUAAAUGAGUGAAUGAUACGGGAGACAAAUUGAAUCUUAUGUUUUCUGUACUUGGACUGAAGGGAGCUCCCUUUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410474.1	ncRNA:21   UC--CCUCGAGGGAAGUCAGGUU   1   ||--||||||||||||||||||| targets:10   AGAAGGAGCUCCCUUCAGUCCAA   32 Target Full Sequence	2.5	Sequence 8599 from Patent EP2074227	NA	coding protein	psRNATarget
JB170935.1	ncRNA:21   UC--CCUCGAGGGAAGUCAGGUU   1   ||--||||||||||||||||||| targets:10   AGAAGGAGCUCCCUUCAGUCCAA   32 Target Full Sequence	2.5	Sequence 8599 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242604.1	ncRNA:21   UC--CCUCGAGGGAAGUCAGGUU   1   ||--||||||||||||||||||| targets:10   AGAAGGAGCUCCCUUCAGUCCAA   32 Target Full Sequence	2.5	Sequence 8599 from Patent EP2985353	NA	coding protein	psRNATarget
BT098668.1	ncRNA:21   UC--CCUCGAGGGAAGUCAGGUU   1   ||--||||||||||||||||||| targets:277   AGAAGGAGCUCCCUUCAGUCCAA   299 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-12F22 unknown mRNA	NA	coding protein	psRNATarget
XM_003526306.3	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   ***||||||||||||*||||| targets:1260   UCAGAGCUCCCUUCACUCCAA   1280 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100805804)	coding protein	psRNATarget
XM_006582324.2	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   ***||||||||||||*||||| targets:1260   UCAGAGCUCCCUUCACUCCAA   1280 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100805804)	coding protein	psRNATarget
XM_003523865.3	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   ***||||||||||||*||||| targets:1323   UCAGAGCUCCCUUCACUCCAA   1343 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100792349)	coding protein	psRNATarget
XM_006578333.2	ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1   ***||||||||||||*||||| targets:1323   UCAGAGCUCCCUUCACUCCAA   1343 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100792349)	coding protein	psRNATarget

Reference

1	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).