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BaseInfo

ncRNA ID	gma-miR5761a
Species	Glycine max
Class	miRNA
Genome position	chr10:50654873-50655068 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUUUGUGUCGUGAAGCUUUUG - 31
Stem-loop(if miRNA)	GA     -AG  U        AA  -       ---U   UUAGAGAUUGCCUUCACAACAAAUUUUCUAUUGCAUUCUUGAUAUGUAGACCCUCCUCU   UUGGA   CA GAGCUUCA  AC CAAGAGG    UGU                                                           G   |||||   || ||||||||  || |||||||    |||                                                           A   AACCU   GU UUCGAAGU  UG GUUUUCC    GAG                                                           U AG     AUA  U        GC  U       CUUU   UUUAUCUUGUAUUACAAAACUCCAAGGUUGUUGGUUCAAACCUAGUAGUAAUGUUUACG
Stem-loop sequence	GAUUGGAAGCAUGAGCUUCAAAACCAAGAGGUUGUUUAGAGAUUGCCUUCACAACAAAUUUUCUAUUGCAUUCUUGAUAUGUAGACCCUCCUCUGAUGCAUUUGUAAUGAUGAUCCAAACUUGGUUGUUGGAACCUCAAAACAUUAUGUUCUAUUUGAGUUUCCCUUUUGUGUCGUGAAGCUUUUGAUAUCCAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT092081.1	ncRNA:21   GUUUUCGAAGUGCUGUGUUUU   1   ||||||||||||||||||||| targets:212   CAAAAGCUUCACGACACAAAA   232 Target Full Sequence	0.0	Soybean clone JCVI-FLGm-25L23 unknown mRNA	NA	coding protein	psRNATarget
AB434690.1	ncRNA:21   GUUUUCGAAGUGCUGUGUUUU   1   ||||||||||||||||||||| targets:119   CAAAAGCUUCACGACACAAAA   139 Target Full Sequence	0.0	Glycine max G4DT mRNA for pterocarpan 4-dimethylallyltransferase, complete cds	NA	coding protein	psRNATarget
NM_001249061.1	ncRNA:21   GUUUUCGAAGUGCUGUGUUUU   1   ||||||||||||||||||||| targets:119   CAAAAGCUUCACGACACAAAA   139 Target Full Sequence	0.0	Glycine max pterocarpan 4-dimethylallyltransferase (G4DT), mRNA	pterocarpan 4-dimethylallyltransferase(G4DT)	coding protein	psRNATarget
XM_014775065.1	ncRNA:21   GUUUUCGAAGUGCUGUGUUUU   1   ||||||||||||*|||||||| targets:236   CAAAAGCUUCACAACACAAAA   256 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X4, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775059.1	ncRNA:21   GUUUUCGAAGUGCUGUGUUUU   1   ||||||||||||*|||||||| targets:233   CAAAAGCUUCACAACACAAAA   253 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X1, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775066.1	ncRNA:21   GUUUUCGAAGUGCUGUGUUUU   1   ||||||||||||*|||||||| targets:233   CAAAAGCUUCACAACACAAAA   253 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X5, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775062.1	ncRNA:21   GUUUUCGAAGUGCUGUGUUUU   1   ||||||||||||*|||||||| targets:234   CAAAAGCUUCACAACACAAAA   254 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X3, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775060.1	ncRNA:21   GUUUUCGAAGUGCUGUGUUUU   1   ||||||||||||*|||||||| targets:234   CAAAAGCUUCACAACACAAAA   254 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X2, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).