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BaseInfo

ncRNA ID gma-miR319f
Species Glycine max
Class miRNA
Genome position chr10:48317374-48317468 [-]
Reference genome v1.0
Source miRBase
Length 20
Mature sequence(if miRNA) 12 - UUGGACUGAAGGGGCCUCUU - 31
Stem-loop(if miRNA) ------AAUUA   U     G    U A     C    C  G  CU  AUU
           AGG GGUCU CUUC G UCCAA GAUG GG AG  GC   U
           ||| ||||| |||| | ||||| |||| || ||  ||
           UUC CCGGG GAAG C AGGUU CUGC CU UC  UG   A
AUACCCUUUAC   U     -    U -     -    A  G  AG  CUG
Stem-loop sequence AAUUAAGGUGGUCUGCUUCUGAUCCAACGAUGCGGGAGCUGCAUUUAGUCGUGACUGUCACGUCUUGGACUGAAGGGGCCUCUUCAUUUCCCAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003521557.3
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  ||||||=|||*|||||||||
targets:2515   AAGAGGUCCCCUCAGUCCAA   2534

2.5 PREDICTED: Glycine max boron transporter 1 (LOC100809823), mRNA boron transporter 1(LOC100809823) coding protein psRNATarget
XM_003554519.3
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  ||||||=|||*|||||||||
targets:2573   AAGAGGUCCCCUCAGUCCAA   2592

2.5 PREDICTED: Glycine max boron transporter 1-like (LOC100776705), mRNA boron transporter 1-like(LOC100776705) coding protein psRNATarget
JB170935.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|||*=|||||||||||||
targets:13   AGGAGCUCCCUUCAGUCCAA   32

3.0 Sequence 8599 from Patent EP2559767 NA coding protein psRNATarget
LQ242604.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|||*=|||||||||||||
targets:13   AGGAGCUCCCUUCAGUCCAA   32

3.0 Sequence 8599 from Patent EP2985353 NA coding protein psRNATarget
HI410474.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|||*=|||||||||||||
targets:13   AGGAGCUCCCUUCAGUCCAA   32

3.0 Sequence 8599 from Patent EP2074227 NA coding protein psRNATarget
BT098668.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|||*=|||||||||||||
targets:280   AGGAGCUCCCUUCAGUCCAA   299

3.0 Soybean clone JCVI-FLGm-12F22 unknown mRNA NA coding protein psRNATarget
AK243726.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2034   AGGGGGACCCUUCAGUCCAA   2053

3.0 Glycine max cDNA, clone: GMFL01-01-B10 NA coding protein psRNATarget
XM_006580038.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:1810   AGGGGGACCCUUCAGUCCAA   1829

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100816799), transcript variant X5, mRNA transcription factor TCP2-like(LOC100816799) coding protein psRNATarget
AK285480.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2035   AGGGGGACCCUUCAGUCCAA   2054

3.0 Glycine max cDNA, clone: GMFL01-10-G08 NA coding protein psRNATarget
XM_003531114.3
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2054   AGGGGGACCCUUCAGUCCAA   2073

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100802134), transcript variant X1, mRNA transcription factor TCP2(LOC100802134) coding protein psRNATarget
XM_006585026.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2066   AGGGGGACCCUUCAGUCCAA   2085

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100802134), transcript variant X2, mRNA transcription factor TCP2(LOC100802134) coding protein psRNATarget
XM_014778809.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2072   AGGGGGACCCUUCAGUCCAA   2091

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100802134), transcript variant X4, mRNA transcription factor TCP2(LOC100802134) coding protein psRNATarget
XM_006585024.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2076   AGGGGGACCCUUCAGUCCAA   2095

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100802134), transcript variant X6, mRNA transcription factor TCP2(LOC100802134) coding protein psRNATarget
XM_014778808.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2081   AGGGGGACCCUUCAGUCCAA   2100

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100802134), transcript variant X3, mRNA transcription factor TCP2(LOC100802134) coding protein psRNATarget
XM_014778811.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2088   AGGGGGACCCUUCAGUCCAA   2107

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100802134), transcript variant X8, mRNA transcription factor TCP2(LOC100802134) coding protein psRNATarget
XM_006580032.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2014   AGGGGGACCCUUCAGUCCAA   2033

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100816799), transcript variant X4, mRNA transcription factor TCP2-like(LOC100816799) coding protein psRNATarget
XM_006580036.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2025   AGGGGGACCCUUCAGUCCAA   2044

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100816799), transcript variant X2, mRNA transcription factor TCP2-like(LOC100816799) coding protein psRNATarget
XM_014778810.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2126   AGGGGGACCCUUCAGUCCAA   2145

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100802134), transcript variant X5, mRNA transcription factor TCP2(LOC100802134) coding protein psRNATarget
XM_006585025.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2138   AGGGGGACCCUUCAGUCCAA   2157

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100802134), transcript variant X7, mRNA transcription factor TCP2(LOC100802134) coding protein psRNATarget
XM_014778812.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2153   AGGGGGACCCUUCAGUCCAA   2172

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100802134), transcript variant X9, mRNA transcription factor TCP2(LOC100802134) coding protein psRNATarget
XM_014765763.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2072   AGGGGGACCCUUCAGUCCAA   2091

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100787772), transcript variant X4, mRNA transcription factor TCP2(LOC100787772) coding protein psRNATarget
XM_014767899.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:1983   AGGGGGACCCUUCAGUCCAA   2002

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X13, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_006597458.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:1985   AGGGGGACCCUUCAGUCCAA   2004

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X11, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_014767897.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:1988   AGGGGGACCCUUCAGUCCAA   2007

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X9, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_014775665.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2095   AGGGGGACCCUUCAGUCCAA   2114

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100816799), transcript variant X3, mRNA transcription factor TCP2-like(LOC100816799) coding protein psRNATarget
XM_014767898.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2013   AGGGGGACCCUUCAGUCCAA   2032

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X10, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_014767896.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2028   AGGGGGACCCUUCAGUCCAA   2047

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X8, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_014775664.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2131   AGGGGGACCCUUCAGUCCAA   2150

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100816799), transcript variant X1, mRNA transcription factor TCP2-like(LOC100816799) coding protein psRNATarget
XM_014767893.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2092   AGGGGGACCCUUCAGUCCAA   2111

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X5, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_006597455.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2098   AGGGGGACCCUUCAGUCCAA   2117

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X4, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_006597454.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2103   AGGGGGACCCUUCAGUCCAA   2122

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X1, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_003547151.3
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2139   AGGGGGACCCUUCAGUCCAA   2158

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X12, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_003541620.3
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2242   AGGGGGACCCUUCAGUCCAA   2261

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100787772), transcript variant X5, mRNA transcription factor TCP2(LOC100787772) coding protein psRNATarget
XM_014767895.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2149   AGGGGGACCCUUCAGUCCAA   2168

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X7, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_006594450.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2248   AGGGGGACCCUUCAGUCCAA   2267

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100787772), transcript variant X3, mRNA transcription factor TCP2(LOC100787772) coding protein psRNATarget
XM_014767892.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2154   AGGGGGACCCUUCAGUCCAA   2173

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X3, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_006594449.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2299   AGGGGGACCCUUCAGUCCAA   2318

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100787772), transcript variant X2, mRNA transcription factor TCP2(LOC100787772) coding protein psRNATarget
XM_006594448.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2304   AGGGGGACCCUUCAGUCCAA   2323

3.0 PREDICTED: Glycine max transcription factor TCP2 (LOC100787772), transcript variant X1, mRNA transcription factor TCP2(LOC100787772) coding protein psRNATarget
XM_006597453.2
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2254   AGGGGGACCCUUCAGUCCAA   2273

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X2, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget
XM_014767894.1
ncRNA:20   UUCUCCGGGGAAGUCAGGUU   1
  |=|=||*|||||||||||||
targets:2305   AGGGGGACCCUUCAGUCCAA   2324

3.0 PREDICTED: Glycine max transcription factor TCP2-like (LOC100806032), transcript variant X6, mRNA transcription factor TCP2-like(LOC100806032) coding protein psRNATarget

Reference

1 PMID:21504877
"MicroRNAs in the shoot apical meristem of soybean";
Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL;
J Exp Bot. 62:2495-2506(2011).
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