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BaseInfo

ncRNA ID	gma-miR399a
Species	Glycine max
Class	miRNA
Genome position	chr10:46275312-46275405 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	64 - UGCCAAAGGAGAGUUGCCCUG - 84
Stem-loop(if miRNA)	AAAAC   U       UU     UA         AAU    A   CCA      AGC AUAGGGC  CUCUU  UUGGCAGGA   UAUC UGA   C      ||| |||||||  |||||  |||||||||   |||| |||      UCG UGUCCCG  GAGAG  AACCGUUCU   AUAG ACU   U UUUCA   U       UU     GA         ---    -   ACU
Stem-loop sequence	AAAACAGCUAUAGGGCUUCUCUUUAUUGGCAGGAAAUUAUCAUGACCACUUCAUCAGAUAUCUUGCCAAAGGAGAGUUGCCCUGUUGCUACUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006597376.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||||||||||||||| targets:720   UUGGGCAACUCUCCUUUGGCA   740 Target Full Sequence	0.0	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_006597375.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||||||||||||||| targets:719   UUGGGCAACUCUCCUUUGGCA   739 Target Full Sequence	0.0	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_003542998.3	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||||||||||||||| targets:710   UUGGGCAACUCUCCUUUGGCA   730 Target Full Sequence	0.0	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_014765804.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||||||||||||||| targets:713   UUGGGCAACUCUCCUUUGGCA   733 Target Full Sequence	0.0	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_003545918.3	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||||||||||||||| targets:719   UUGGGCAACUCUCCUUUGGCA   739 Target Full Sequence	0.0	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_014765805.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||||||||||||||| targets:713   UUGGGCAACUCUCCUUUGGCA   733 Target Full Sequence	0.0	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_006597376.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1034   CUGGGCAAAUCUCCUUUGGCA   1054 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_006597376.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   **||||||*|||||||||||| targets:605   GUGGGCAAAUCUCCUUUGGCA   625 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_006597375.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1033   CUGGGCAAAUCUCCUUUGGCA   1053 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_006597375.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   **||||||*|||||||||||| targets:604   GUGGGCAAAUCUCCUUUGGCA   624 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_003542998.3	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1009   CUGGGCAAAUCUCCUUUGGCA   1029 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_003542998.3	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   **||||||*|||||||||||| targets:599   GUGGGCAAAUCUCCUUUGGCA   619 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_014765804.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1012   CUGGGCAAAUCUCCUUUGGCA   1032 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_014765804.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   **||||||*|||||||||||| targets:602   GUGGGCAAAUCUCCUUUGGCA   622 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_003545918.3	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1033   CUGGGCAAAUCUCCUUUGGCA   1053 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_003545918.3	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   **||||||*|||||||||||| targets:604   GUGGGCAAAUCUCCUUUGGCA   624 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_014765805.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1012   CUGGGCAAAUCUCCUUUGGCA   1032 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_014765805.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   **||||||*|||||||||||| targets:602   GUGGGCAAAUCUCCUUUGGCA   622 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
BT090266.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:512   GGGGGCAAAUCUCCUUUGGCA   532 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-4E15 unknown mRNA	NA	coding protein	psRNATarget
XM_003528406.3	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:710   GGGGGCAAAUCUCCUUUGGCA   730 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_014778124.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:710   GGGGGCAAAUCUCCUUUGGCA   730 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_003542700.3	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:1049   GGGGGCAAAUCUCCUUUGGCA   1069 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100306246)	coding protein	psRNATarget
XM_006594256.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:1084   GGGGGCAAAUCUCCUUUGGCA   1104 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100306246)	coding protein	psRNATarget
FJ797404.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   ||||||||||||=|||||||* targets:248   CAGGGCAACUCUUCUUUGGCU   268 Target Full Sequence	2.5	Glycine max phosphate transporter1-4 (Pht1-4) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001317659.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   ||||||||||||=|||||||* targets:416   CAGGGCAACUCUUCUUUGGCU   436 Target Full Sequence	2.5	Glycine max inorganic phosphate transporter 1-4 (GMPT5), mRNA	inorganic phosphate transporter 1-4(LOC100786638)	coding protein	psRNATarget
FJ797411.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |=||||||||||=|||||||* targets:245   CGGGGCAACUCUUCUUUGGCU   265 Target Full Sequence	2.5	Glycine max phosphate transporter1-11 (Pht1-11) mRNA, complete cds	NA	coding protein	psRNATarget
XM_003544804.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |=||||||||||=|||||||* targets:821   CGGGGCAACUCUUCUUUGGCU   841 Target Full Sequence	2.5	PREDICTED: Glycine max probable inorganic phosphate transporter 1-3 (LOC100820250), mRNA	probable inorganic phosphate transporter 1-3(LOC100820250)	coding protein	psRNATarget
XM_003528406.3	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |*|||*||*|||||||||||| targets:999   CUGGGAAAAUCUCCUUUGGCA   1019 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_003528406.3	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*|||||**|||||||||||| targets:908   UUGGGCAUAUCUCCUUUGGCA   928 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_014778124.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |*|||*||*|||||||||||| targets:999   CUGGGAAAAUCUCCUUUGGCA   1019 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_014778124.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*|||||**|||||||||||| targets:908   UUGGGCAUAUCUCCUUUGGCA   928 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_003542700.3	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*|||||**|||||||||||| targets:1233   UUGGGCAUAUCUCCUUUGGCA   1253 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100306246)	coding protein	psRNATarget
XM_006594256.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*|||||**|||||||||||| targets:1268   UUGGGCAUAUCUCCUUUGGCA   1288 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100306246)	coding protein	psRNATarget
BT090627.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   ||*|*=||||||||||||||| targets:399   CAAGUUAACUCUCCUUUGGCA   419 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-4P14 unknown mRNA	NA	coding protein	psRNATarget
NM_001248920.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   ||*|*=||||||||||||||| targets:800   CAAGUUAACUCUCCUUUGGCA   820 Target Full Sequence	3.0	Glycine max QLQ and WRC domain-containing protein (LOC100306494), mRNA	uncharacterized LOC100306494(LOC100306494)	coding protein	psRNATarget
XM_006576092.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   ||*|*=||||||||||||||| targets:806   CAAGUUAACUCUCCUUUGGCA   826 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100306494 (LOC100306494), transcript variant X1, mRNA	uncharacterized LOC100306494(LOC100306494)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).