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BaseInfo

ncRNA ID gma-miR160a-3p
Species Glycine max
Class miRNA
Genome position chr10:43851639-43851757 [-]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 18 - GCGUAUGAGGAGCCAAGCAUA - 38
Stem-loop(if miRNA)     C  AC     UGU      C       CU          UG     C    C  A
CAUG AU  AUAUG   AUGUGC UGGCUCC  GUAUGCCAUU  UAGAG UCAU GA G
|||| ||  |||||   |||||| |||||||  ||||||||||  ||||| |||| ||
GUAC UA  UAUAC   UAUACG ACCGAGG  UAUGCGGUAG  GUUUC AGUA CU C
    A  CA     -UU      A       AG          GU     C    A  A
Stem-loop sequence CAUGCAUACAUAUGUGUAUGUGCCUGGCUCCCUGUAUGCCAUUUGUAGAGCUCAUCGAAGCAUCAAUGACCUUUGUGGAUGGCGUAUGAGGAGCCAAGCAUAUUUCAUAUACAUACAUG

Reference

1 PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots";
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
BMC Genomics. 9:160(2008).
2 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).