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BaseInfo

ncRNA ID	gma-miR160a-5p
Species	Glycine max
Class	miRNA
Genome position	chr10:43851639-43851757 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	79 - UGCCUGGCUCCCUGUAUGCCA - 99
Stem-loop(if miRNA)	C  AC     UGU      C       CU          UG     C    C  A CAUG AU  AUAUG   AUGUGC UGGCUCC  GUAUGCCAUU  UAGAG UCAU GA G |||| ||  |||||   |||||| |||||||  ||||||||||  ||||| |||| || GUAC UA  UAUAC   UAUACG ACCGAGG  UAUGCGGUAG  GUUUC AGUA CU C     A  CA     -UU      A       AG          GU     C    A  A
Stem-loop sequence	CAUGCAUACAUAUGUGUAUGUGCCUGGCUCCCUGUAUGCCAUUUGUAGAGCUCAUCGAAGCAUCAAUGACCUUUGUGGAUGGCGUAUGAGGAGCCAAGCAUAUUUCAUAUACAUACAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006604512.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||||||||||||||||| targets:2235   UGGCAUACAGGGAGCCAGGCA   2255 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100791442), mRNA	auxin response factor 18-like(LOC100791442)	coding protein	psRNATarget
XM_003555388.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1551   AGGCAUACAGGGAGCCAGGCA   1571 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100818234), mRNA	auxin response factor 18-like(LOC100818234)	coding protein	psRNATarget
XM_003535482.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1555   AGGCAUACAGGGAGCCAGGCA   1575 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100803053), mRNA	auxin response factor 18-like(LOC100803053)	coding protein	psRNATarget
XM_003540137.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1643   AGGCAUACAGGGAGCCAGGCA   1663 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100778135), transcript variant X1, mRNA	auxin response factor 18-like(LOC100778135)	coding protein	psRNATarget
XM_006592639.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1690   AGGCAUACAGGGAGCCAGGCA   1710 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100778135), transcript variant X2, mRNA	auxin response factor 18-like(LOC100778135)	coding protein	psRNATarget
XM_003543422.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1807   AGGCAUACAGGGAGCCAGGCA   1827 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100808472), mRNA	auxin response factor 18-like(LOC100808472)	coding protein	psRNATarget
LQ242712.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:166   UGGCAUGCAGGGAGCCAGGCA   186 Target Full Sequence	1.0	Sequence 8707 from Patent EP2985353	NA	coding protein	psRNATarget
JB171043.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:166   UGGCAUGCAGGGAGCCAGGCA   186 Target Full Sequence	1.0	Sequence 8707 from Patent EP2559767	NA	coding protein	psRNATarget
HI410582.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:166   UGGCAUGCAGGGAGCCAGGCA   186 Target Full Sequence	1.0	Sequence 8707 from Patent EP2074227	NA	coding protein	psRNATarget
XM_006596796.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1461   UGGCAUGCAGGGAGCCAGGCA   1481 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 17-like (LOC100804933), mRNA	auxin response factor 17-like(LOC100804933)	coding protein	psRNATarget
XM_003543732.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1539   UGGCAUGCAGGGAGCCAGGCA   1559 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 17-like (LOC100805638), mRNA	auxin response factor 17-like(LOC100805638)	coding protein	psRNATarget
XM_006578927.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1509   UGGCAUGCAGGGAGCCAGGCA   1529 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 17-like (LOC102662128), mRNA	auxin response factor 17-like(LOC102662128)	coding protein	psRNATarget
XM_014762999.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1474   UGGCAUGCAGGGAGCCAGGCA   1494 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X3, mRNA	auxin response factor 18-like(LOC100796522)	coding protein	psRNATarget
XM_003537248.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1742   UGGCAUGCAGGGAGCCAGGCA   1762 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X2, mRNA	auxin response factor 18-like(LOC100796522)	coding protein	psRNATarget
XM_014763000.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1974   UGGCAUGCAGGGAGCCAGGCA   1994 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X4, mRNA	auxin response factor 18-like(LOC100796522)	coding protein	psRNATarget
XM_006588721.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1974   UGGCAUGCAGGGAGCCAGGCA   1994 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X1, mRNA	auxin response factor 18-like(LOC100796522)	coding protein	psRNATarget
XM_003538112.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1518   AGGGAUACAGGGAGCCAGGCA   1538 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100810558), mRNA	auxin response factor 18-like(LOC100810558)	coding protein	psRNATarget
XM_003539718.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1572   AGGGAUACAGGGAGCCAGGCA   1592 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100814686), mRNA	auxin response factor 18-like(LOC100814686)	coding protein	psRNATarget
XM_003533214.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||=|||||||||||| targets:2544   AGGCAUACGGGGAGCCAGGCA   2564 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100818857), mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100818857)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).