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BaseInfo

ncRNA ID	gma-miR172h-5p
Species	Glycine max
Class	miRNA
Genome position	chr10:43474733-43474823 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	7 - GCAGCAGCAUCAAGAUUCACA - 27
Stem-loop(if miRNA)	A         G           A  -   A  UU   - U  U GC GGUGCAGCA CAUCAAGAUUC CA CAC GA  UAC C CC U || ||||||||| ||||||||||| || ||| ||  ||| | || G CG CUACGUCGU GUAGUUCUAAG GU GUG CU  GUG G GG G   A         A           A  C   G  UU   U C  G
Stem-loop sequence	GCAGGUGCAGCAGCAUCAAGAUUCACACACAGAUUUACCUCCUUGGGGGCGUGUGUUUCGGUGCUGAGAAUCUUGAUGAUGCUGCAUCAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK286907.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   **||||||*|||||||||||| targets:511   ACUGAAUCAUGAUGCUGCUGC   531 Target Full Sequence	1.5	Glycine max cDNA, clone: GMFL01-39-P15	NA	coding protein	psRNATarget
XM_006590614.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   **||||||*|||||||||||| targets:614   ACUGAAUCAUGAUGCUGCUGC   634 Target Full Sequence	1.5	PREDICTED: Glycine max NEDD8-conjugating enzyme Ubc12 (LOC100783122), mRNA	NEDD8-conjugating enzyme Ubc12(LOC100783122)	coding protein	psRNATarget
XM_006599370.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   ***|||*|||||||||||||| targets:1419   AAAGAACCUUGAUGCUGCUGC   1439 Target Full Sequence	2.0	PREDICTED: Glycine max E3 ubiquitin-protein ligase RNF115-like (LOC100790855), mRNA	E3 ubiquitin-protein ligase RNF115-like(LOC100790855)	coding protein	psRNATarget
JA894828.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   ||*|||||||||||*|||||| targets:118   UGAGAAUCUUGAUGAUGCUGC   138 Target Full Sequence	2.5	Sequence 145 from Patent WO2011067745	NA	coding protein	psRNATarget
XM_014774451.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   |*|||||=*|||||||||||| targets:935   UUUGAAUUAUGAUGCUGCUGC   955 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidate phosphatase PAH2-like (LOC100811824), transcript variant X4, mRNA	phosphatidate phosphatase PAH2-like(LOC100811824)	coding protein	psRNATarget
XM_014774450.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   |*|||||=*|||||||||||| targets:935   UUUGAAUUAUGAUGCUGCUGC   955 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidate phosphatase PAH2-like (LOC100811824), transcript variant X3, mRNA	phosphatidate phosphatase PAH2-like(LOC100811824)	coding protein	psRNATarget
XM_006577956.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   |*|||||=*|||||||||||| targets:934   UUUGAAUUAUGAUGCUGCUGC   954 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidate phosphatase PAH2-like (LOC100811824), transcript variant X2, mRNA	phosphatidate phosphatase PAH2-like(LOC100811824)	coding protein	psRNATarget
XM_006577955.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   |*|||||=*|||||||||||| targets:934   UUUGAAUUAUGAUGCUGCUGC   954 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidate phosphatase PAH2-like (LOC100811824), transcript variant X1, mRNA	phosphatidate phosphatase PAH2-like(LOC100811824)	coding protein	psRNATarget
XM_014765083.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   |||*=|||||||||||||||= targets:2165   UGUUGAUCUUGAUGCUGCUGU   2185 Target Full Sequence	3.0	PREDICTED: Glycine max trafficking protein particle complex II-specific subunit 130 homolog (LOC100782619), transcript variant X2, mRNA	trafficking protein particle complex II-specific subunit 130 homolog(LOC100782619)	coding protein	psRNATarget
XM_003540398.3	ncRNA:21   ACACUUAGAACUACGACGACG   1   |||*=|||||||||||||||= targets:2674   UGUUGAUCUUGAUGCUGCUGU   2694 Target Full Sequence	3.0	PREDICTED: Glycine max trafficking protein particle complex II-specific subunit 130 homolog (LOC100782619), transcript variant X1, mRNA	trafficking protein particle complex II-specific subunit 130 homolog(LOC100782619)	coding protein	psRNATarget
XM_003543213.3	ncRNA:21   ACACUUAGAACUACGACGACG   1   |||*=|||||||||||||||= targets:2652   UGUUGAUCUUGAUGCUGCUGU   2672 Target Full Sequence	3.0	PREDICTED: Glycine max trafficking protein particle complex II-specific subunit 130 homolog (LOC100787264), mRNA	trafficking protein particle complex II-specific subunit 130 homolog(LOC100787264)	coding protein	psRNATarget
XM_014778684.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:118   GGUGGGUCUUGAUGCUGCUGG   138 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100305887 (LOC100305887), transcript variant X2, mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
NM_001251316.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:139   GGUGGGUCUUGAUGCUGCUGG   159 Target Full Sequence	3.0	Glycine max uncharacterized LOC100305887 (LOC100305887), mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
BT089709.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:139   GGUGGGUCUUGAUGCUGCUGG   159 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-2L23 unknown mRNA	NA	coding protein	psRNATarget
XM_006572737.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:313   GGUGGGUCUUGAUGCUGCUGG   333 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100305887 (LOC100305887), transcript variant X5, mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
XM_006572735.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:348   GGUGGGUCUUGAUGCUGCUGG   368 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100305887 (LOC100305887), transcript variant X3, mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
XM_014779066.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:392   GGUGGGUCUUGAUGCUGCUGG   412 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100305887 (LOC100305887), transcript variant X4, mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
XM_006572736.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:399   GGUGGGUCUUGAUGCUGCUGG   419 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100305887 (LOC100305887), transcript variant X1, mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
AK245270.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   ||||||**||||||||||||* targets:613   UGUGAAAGUUGAUGCUGCUGA   633 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-25-K07	NA	coding protein	psRNATarget
XM_003526669.3	ncRNA:21   ACACUUAGAACUACGACGACG   1   ||||||**||||||||||||* targets:793   UGUGAAAGUUGAUGCUGCUGA   813 Target Full Sequence	3.0	PREDICTED: Glycine max CLP protease regulatory subunit CLPX1, mitochondrial (LOC100779768), mRNA	CLP protease regulatory subunit CLPX1, mitochondrial(LOC100779768)	coding protein	psRNATarget

Reference

1

PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).