Search result

BaseInfo

ncRNA ID	gma-miR172g
Species	Glycine max
Class	miRNA
Genome position	chr10:31592576-31592689 [-]
Reference genome	v1.0
Source	miRBase
Length	20
Mature sequence(if miRNA)	89 - GCAGCACCAUCAAGAUUCAC - 108
Stem-loop(if miRNA)	A         C           A  -UG   UUU  A -    --U          U GC GGUGCAGCA CAUCAAGAUUC CA   CAA   AC C CCUA   AAGAGAUUUU G || ||||||||| ||||||||||| ||   |||   || | ||||   |||||||||| CG CUACGUCGU GUAGUUCUAAG GU   GUU   UG G GGAU   UUCUUUAAAA A   A         A           A  UCA   --U  A A    CCU          C
Stem-loop sequence	GCAGGUGCAGCACCAUCAAGAUUCACAUGCAAUUUACACCCUAUAAGAGAUUUUUGACAAAAUUUCUUUCCUAGGAGAGUUUUGACUUGAGAAUCUUGAUGAUGCUGCAUCAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JA894828.1	ncRNA:20   CACUUAGAACUACCACGACG   1   |*|||||||||||*|||||| targets:119   GAGAAUCUUGAUGAUGCUGC   138 Target Full Sequence	2.5	Sequence 145 from Patent WO2011067745	NA	coding protein	psRNATarget
XM_006591018.2	ncRNA:20   CACUUAGAACUACCACGACG   1   ***||||||||||||||||= targets:3383   UCAAAUCUUGAUGGUGCUGU   3402 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100784211 (LOC100784211), transcript variant X1, mRNA	uncharacterized LOC100784211(LOC100784211)	coding protein	psRNATarget
XM_003540748.3	ncRNA:20   CACUUAGAACUACCACGACG   1   ***||||||||||||||||= targets:3422   UCAAAUCUUGAUGGUGCUGU   3441 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100817881 (LOC100817881), transcript variant X2, mRNA	uncharacterized LOC100817881(LOC100817881)	coding protein	psRNATarget
XM_006591019.2	ncRNA:20   CACUUAGAACUACCACGACG   1   ***||||||||||||||||= targets:3490   UCAAAUCUUGAUGGUGCUGU   3509 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100784211 (LOC100784211), transcript variant X2, mRNA	uncharacterized LOC100784211(LOC100784211)	coding protein	psRNATarget
XM_014764131.1	ncRNA:20   CACUUAGAACUACCACGACG   1   ***||||||||||||||||= targets:3525   UCAAAUCUUGAUGGUGCUGU   3544 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100784211 (LOC100784211), transcript variant X3, mRNA	uncharacterized LOC100784211(LOC100784211)	coding protein	psRNATarget
XM_006592258.2	ncRNA:20   CACUUAGAACUACCACGACG   1   ***||||||||||||||||= targets:3537   UCAAAUCUUGAUGGUGCUGU   3556 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100817881 (LOC100817881), transcript variant X1, mRNA	uncharacterized LOC100817881(LOC100817881)	coding protein	psRNATarget
XM_006592259.2	ncRNA:20   CACUUAGAACUACCACGACG   1   ***||||||||||||||||= targets:3628   UCAAAUCUUGAUGGUGCUGU   3647 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100817881 (LOC100817881), transcript variant X3, mRNA	uncharacterized LOC100817881(LOC100817881)	coding protein	psRNATarget

Reference

1

PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).