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BaseInfo

ncRNA ID	ath-miR5634
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr4:14982320-14982545 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	3 - AGGGACUUUGUGAAUUUAGGG - 23
Stem-loop(if miRNA)	U               U      AUU         CG   G  --G   GAUGAGCGACUUUGUGAAUUUAGGGUCUGUCUGUCAAUUUGGCGGGCUGUCCAUGGGCCAAGCG  GAGGGACUUUGUGAA UUAGGG   UUAUUAUAG  GUG CU   GCU                                                                U  ||||||||||||||| ||||||   |||||||||  ||| ||   |||  CUCUCUGAAACACUU AAUCCC   AAUGAUGUU  CAC GG   GAA                                                                C A               U      ACC         AA   G  AUA   ACUAUAUCCUAGAAUUACCCGACCUGGACCGUGAAUCAUCCGAACCCGGGUUUUUGGACGCUUU
Stem-loop sequence	UGAGGGACUUUGUGAAUUUAGGGAUUUUAUUAUAGCGGUGGCUGGCUGAUGAGCGACUUUGUGAAUUUAGGGUCUGUCUGUCAAUUUGGCGGGCUGUCCAUGGGCCAAGCGUCUUUCGCAGGUUUUUGGGCCCAAGCCUACUAAGUGCCAGGUCCAGCCCAUUAAGAUCCUAUAUCAAAGAUAGGGCACAAUUGUAGUAACCACCCUAAUUUCACAAAGUCUCUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_119221.5	ncRNA:21   GGGAUUUAAGUGUUUCAGGGA   1   ||||||||||||||||||||| targets:63   CCCUAAAUUCACAAAGUCCCU   83 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT4G30750)	coding protein	psRNATarget
NM_119221.5	ncRNA:21   GGGAUUUAAGUGUUUCAGGGA   1   ||||||||||||||||||*|| targets:14   CCCUAAAUUCACAAAGUCGCU   34 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT4G30750)	coding protein	psRNATarget
AY086097.1	ncRNA:21   GGGAUUUAAGUGUUUCAGGGA   1   ||||||*|||||||||||=|| targets:2   CCCUAAUUUCACAAAGUCUCU   22 Target Full Sequence	2.5	Arabidopsis thaliana clone 21252 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_179144.2	ncRNA:21   GGGAUUUAAGUGUUUCAGGGA   1   ||||||*|||||||||||=|| targets:74   CCCUAAUUUCACAAAGUCUCU   94 Target Full Sequence	2.5	Arabidopsis thaliana Putative endonuclease or glycosyl hydrolase mRNA	Putative endonuclease or glycosyl hydrolase(AT4G30760)	coding protein	psRNATarget
AK318927.1	ncRNA:21   GGGAUUUAAGUGUUUCAGGGA   1   ||||||*|||||||||||=|| targets:2   CCCUAAUUUCACAAAGUCUCU   22 Target Full Sequence	2.5	Arabidopsis thaliana AT4G30760 mRNA, complete cds, clone: RAFL21-88-B12	NA	coding protein	psRNATarget
NM_119222.3	ncRNA:21   GGGAUUUAAGUGUUUCAGGGA   1   ||||||*|||||||||||=|| targets:165   CCCUAAUUUCACAAAGUCUCU   185 Target Full Sequence	2.5	Arabidopsis thaliana Putative endonuclease or glycosyl hydrolase mRNA	Putative endonuclease or glycosyl hydrolase(AT4G30760)	coding protein	psRNATarget
BX828595.1	ncRNA:21   GGGAUUUAAGUGUUUCA-GGGA   1   |||||||||||||||||-|||| targets:7   CCCUAAAUUCACAAAGUACCCU   28 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL1ZC03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget

Reference

1	PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012).