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BaseInfo

ncRNA ID gma-miR393d
Species Glycine max
Class miRNA
Genome position chr10:16966548-16966670 [+]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 13 - UCCAAAGGGAUCGCAUUGAUCC - 34
Stem-loop(if miRNA) C         C            C    U         UCCA   UUCAAUGUUCUUCUAUCU
 UAGAGGAGG AUCCAAAGGGAU GCAU GAUCCCAAA    AGC                  U
 ||||||||| |||||||||||| |||| |||||||||    |||
 AUUUCCUCU UAGGUUUCCCUA CGUA CUAGGGUUU    UUU                  U
-         U            U    -         ---A   UAAUUAUAAAACUCACUC
Stem-loop sequence CUAGAGGAGGCAUCCAAAGGGAUCGCAUUGAUCCCAAAUCCAAGCUUCAAUGUUCUUCUAUCUUUCUCACUCAAAAUAUUAAUUUUAUUUGGGAUCAUGCUAUCCCUUUGGAUUUCUCCUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK286220.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  |*|*||||||||||||||||||
targets:2267   GAAACAAUGCGAUCCCUUUGGA   2288

1.0 Glycine max cDNA, clone: GMFL01-24-D14 NA coding protein psRNATarget
XM_003548885.3
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  |*|*||||||||||||||||||
targets:2264   GAAACAAUGCGAUCCCUUUGGA   2285

1.0 PREDICTED: Glycine max protein AUXIN SIGNALING F-BOX 2 (LOC100788209), mRNA protein AUXIN SIGNALING F-BOX 2(LOC100788209) coding protein psRNATarget
XM_003553924.3
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  |*|*||||||||||||||||||
targets:2305   GAAACAAUGCGAUCCCUUUGGA   2326

1.0 PREDICTED: Glycine max protein AUXIN SIGNALING F-BOX 2-like (LOC100812516), mRNA protein AUXIN SIGNALING F-BOX 2-like(LOC100812516) coding protein psRNATarget
XM_003518079.3
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  |*|*|=||||||||||||||||
targets:2238   GAAACGAUGCGAUCCCUUUGGA   2259

2.0 PREDICTED: Glycine max protein AUXIN SIGNALING F-BOX 2-like (LOC100788040), mRNA protein AUXIN SIGNALING F-BOX 2-like(LOC100788040) coding protein psRNATarget
AK287367.1
ncRNA:22   CCUA-GUUACGCUAGGGAAACCU   1
  |||*-||||||||||||||||||
targets:1729   GGAGACAAUGCGAUCCCUUUGGA   1751

3.0 Glycine max cDNA, clone: GMFL01-51-J22 NA coding protein psRNATarget
AK285863.1
ncRNA:22   CCUA-GUUACGCUAGGGAAACCU   1
  |||*-||||||||||||||||||
targets:1620   GGAGACAAUGCGAUCCCUUUGGA   1642

3.0 Glycine max cDNA, clone: GMFL01-17-K05 NA coding protein psRNATarget
XM_003536233.3
ncRNA:22   CCUA-GUUACGCUAGGGAAACCU   1
  |||*-||||||||||||||||||
targets:1714   GGAGACAAUGCGAUCCCUUUGGA   1736

3.0 PREDICTED: Glycine max protein TRANSPORT INHIBITOR RESPONSE 1 (LOC100779337), transcript variant X1, mRNA protein TRANSPORT INHIBITOR RESPONSE 1(LOC100779337) coding protein psRNATarget
AK286056.1
ncRNA:22   CCUA-GUUACGCUAGGGAAACCU   1
  |||*-||||||||||||||||||
targets:1704   GGAGACAAUGCGAUCCCUUUGGA   1726

3.0 Glycine max cDNA, clone: GMFL01-21-A01 NA coding protein psRNATarget
XM_003518902.2
ncRNA:22   CCUA-GUUACGCUAGGGAAACCU   1
  |||*-||||||||||||||||||
targets:1735   GGAGACAAUGCGAUCCCUUUGGA   1757

3.0 PREDICTED: Glycine max protein TRANSPORT INHIBITOR RESPONSE 1 (LOC100809794), transcript variant X1, mRNA protein TRANSPORT INHIBITOR RESPONSE 1(LOC100809794) coding protein psRNATarget
XM_014771942.1
ncRNA:22   CCUA-GUUACGCUAGGGAAACCU   1
  |||*-||||||||||||||||||
targets:1755   GGAGACAAUGCGAUCCCUUUGGA   1777

3.0 PREDICTED: Glycine max protein TRANSPORT INHIBITOR RESPONSE 1 (LOC100779021), mRNA protein TRANSPORT INHIBITOR RESPONSE 1(LOC100779021) coding protein psRNATarget
XM_014773943.1
ncRNA:22   CCUA-GUUACGCUAGGGAAACCU   1
  |||*-||||||||||||||||||
targets:1761   GGAGACAAUGCGAUCCCUUUGGA   1783

3.0 PREDICTED: Glycine max protein TRANSPORT INHIBITOR RESPONSE 1-like (LOC100816241), transcript variant X2, mRNA protein TRANSPORT INHIBITOR RESPONSE 1-like(LOC100816241) coding protein psRNATarget
AK285977.1
ncRNA:22   CCUA-GUUACGCUAGGGAAACCU   1
  |||*-||||||||||||||||||
targets:2106   GGAGACAAUGCGAUCCCUUUGGA   2128

3.0 Glycine max cDNA, clone: GMFL01-19-K09 NA coding protein psRNATarget

Reference

1 PMID:22559273
"Genome organization and characteristics of soybean microRNAs";
Turner M, Yu O, Subramanian S;
BMC Genomics. 13:169(2012).
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