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BaseInfo

ncRNA ID	gma-miR160f
Species	Glycine max
Class	miRNA
Genome position	chr10:4733500-4733596 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	68 - UGCCUGGCUCCCUGUAUGCCA - 88
Stem-loop(if miRNA)	U    U      C       CU            UAGACC       A  ACAU GUGUGC UGGCUCC  GUAUGCCAUUUG      CCAUCAC A  |||| |||||| |||||||  ||||||||||||      |||||||  UGUG CGUACG ACUGAGG  UAUGCGGUAAAC      GGUAGUG U -    U      U       AG            UAUUCC       G
Stem-loop sequence	UACAUUGUGUGCCUGGCUCCCUGUAUGCCAUUUGUAGACCCCAUCACAAUGGUGAUGGCCUUAUCAAAUGGCGUAUGAGGAGUCAUGCAUGCUGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006604512.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||||||||||||||||| targets:2235   UGGCAUACAGGGAGCCAGGCA   2255 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100791442), mRNA	auxin response factor 18-like(LOC100791442)	coding protein	psRNATarget
XM_003555388.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1551   AGGCAUACAGGGAGCCAGGCA   1571 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100818234), mRNA	auxin response factor 18-like(LOC100818234)	coding protein	psRNATarget
XM_003535482.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1555   AGGCAUACAGGGAGCCAGGCA   1575 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100803053), mRNA	auxin response factor 18-like(LOC100803053)	coding protein	psRNATarget
XM_003540137.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1643   AGGCAUACAGGGAGCCAGGCA   1663 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100778135), transcript variant X1, mRNA	auxin response factor 18-like(LOC100778135)	coding protein	psRNATarget
XM_006592639.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1690   AGGCAUACAGGGAGCCAGGCA   1710 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100778135), transcript variant X2, mRNA	auxin response factor 18-like(LOC100778135)	coding protein	psRNATarget
XM_003543422.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||||||||||||||| targets:1807   AGGCAUACAGGGAGCCAGGCA   1827 Target Full Sequence	0.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100808472), mRNA	auxin response factor 18-like(LOC100808472)	coding protein	psRNATarget
JB171043.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:166   UGGCAUGCAGGGAGCCAGGCA   186 Target Full Sequence	1.0	Sequence 8707 from Patent EP2559767	NA	coding protein	psRNATarget
HI410582.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:166   UGGCAUGCAGGGAGCCAGGCA   186 Target Full Sequence	1.0	Sequence 8707 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242712.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:166   UGGCAUGCAGGGAGCCAGGCA   186 Target Full Sequence	1.0	Sequence 8707 from Patent EP2985353	NA	coding protein	psRNATarget
XM_006596796.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1461   UGGCAUGCAGGGAGCCAGGCA   1481 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 17-like (LOC100804933), mRNA	auxin response factor 17-like(LOC100804933)	coding protein	psRNATarget
XM_003543732.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1539   UGGCAUGCAGGGAGCCAGGCA   1559 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 17-like (LOC100805638), mRNA	auxin response factor 17-like(LOC100805638)	coding protein	psRNATarget
XM_006578927.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1509   UGGCAUGCAGGGAGCCAGGCA   1529 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 17-like (LOC102662128), mRNA	auxin response factor 17-like(LOC102662128)	coding protein	psRNATarget
XM_014762999.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1474   UGGCAUGCAGGGAGCCAGGCA   1494 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X3, mRNA	auxin response factor 18-like(LOC100796522)	coding protein	psRNATarget
XM_003537248.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1742   UGGCAUGCAGGGAGCCAGGCA   1762 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X2, mRNA	auxin response factor 18-like(LOC100796522)	coding protein	psRNATarget
XM_014763000.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1974   UGGCAUGCAGGGAGCCAGGCA   1994 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X4, mRNA	auxin response factor 18-like(LOC100796522)	coding protein	psRNATarget
XM_006588721.2	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1974   UGGCAUGCAGGGAGCCAGGCA   1994 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100796522), transcript variant X1, mRNA	auxin response factor 18-like(LOC100796522)	coding protein	psRNATarget
XM_003538112.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1518   AGGGAUACAGGGAGCCAGGCA   1538 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100810558), mRNA	auxin response factor 18-like(LOC100810558)	coding protein	psRNATarget
XM_003539718.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1572   AGGGAUACAGGGAGCCAGGCA   1592 Target Full Sequence	1.0	PREDICTED: Glycine max auxin response factor 18-like (LOC100814686), mRNA	auxin response factor 18-like(LOC100814686)	coding protein	psRNATarget
XM_003533214.3	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||||=|||||||||||| targets:2544   AGGCAUACGGGGAGCCAGGCA   2564 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100818857), mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100818857)	coding protein	psRNATarget

Reference

1	PMID:22559273 "Genome organization and characteristics of soybean microRNAs"; Turner M, Yu O, Subramanian S; BMC Genomics. 13:169(2012).