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BaseInfo

ncRNA ID	ath-miR828
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr4:13846971-13847161 [+]
Reference genome	TAIR10
Source	miRBase
Length	22
Mature sequence(if miRNA)	50 - UCUUGCUUAAAUGAGUAUUCCA - 71
Stem-loop(if miRNA)	----     AAAGUCACAAAAGUGAUAAACUCUCCUUUCCACUUUCUAAUGUUUCUUGCUUAAAUGAGUAUUCCAUGUAAAAAUGAUUCACUCACU     GUGAC                                                                                       C     |||||                                                                                       G     CUAUU                                                                                       U UUUU     UUGAGUAUGUACUAUAAUUUAUCAGGGUGAAGGUUUGUAACGAACGAGUUUACUCGUAGAGUACUUCUCUUUUGGGUUGGGUGGGUA
Stem-loop sequence	GUGACAAAGUCACAAAAGUGAUAAACUCUCCUUUCCACUUUCUAAUGUUUCUUGCUUAAAUGAGUAUUCCAUGUAAAAAUGAUUCACUCACUCGUAUGGGUGGGUUGGGUUUUCUCUUCAUGAGAUGCUCAUUUGAGCAAGCAAUGUUUGGAAGUGGGACUAUUUAAUAUCAUGUAUGAGUUUUAUCUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK227365.1	ncRNA:22   ACCUUAUGAGUAAAUUCGUUCU   1   ||||||||||||||=||||||| targets:875   UGGAAUACUCAUUUGAGCAAGA   896 Target Full Sequence	1.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-D19	NA	coding protein	psRNATarget

Reference

1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).