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BaseInfo

ncRNA ID	gma-miR156t
Species	Glycine max
Class	miRNA
Genome position	chr1:55282671-55282770 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUGACAGAAGAAAGGGAGCAC - 31
Stem-loop(if miRNA)	CUUUUA           -        -      A   U    UUA    A       GAGAUUGACAG AAGAAAGG GAGCAC UAC GCAA   UAUG A       ||||||||||| |||||||| |||||| ||| ||||   ||||       CUCUAACUGUC UUCUUUUC CUCGUG GUG CGUU   AUAC C AUUAUG           G        U      C   C    UCC    A
Stem-loop sequence	CUUUUAGAGAUUGACAGAAGAAAGGGAGCACAUACUGCAAUUAUAUGAACACAUACCUUUGCCGUGCGUGCUCUCUUUUCUUGCUGUCAAUCUCGUAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT098928.1	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   *|||||||||||||||||||| targets:894   AUGCUCCCUUUCUUCUGUCAA   914 Target Full Sequence	0.0	Soybean clone JCVI-FLGm-16D18 unknown mRNA	NA	coding protein	psRNATarget
XM_003540425.3	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   *||||||||*||||||||||| targets:811   AUGCUCCCUCUCUUCUGUCAA   831 Target Full Sequence	1.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 3 (LOC100305703), mRNA	squamosa promoter-binding-like protein 3(LOC100305703)	coding protein	psRNATarget
XM_003543185.3	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   *||||||||*||||||||||| targets:1364   AUGCUCCCUCUCUUCUGUCAA   1384 Target Full Sequence	1.5	PREDICTED: Glycine max squamosa promoter-binding protein 1-like (LOC100815775), mRNA	squamosa promoter-binding protein 1-like(LOC100815775)	coding protein	psRNATarget
XM_006575162.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:647   GUGCUCUCUCUCUUCUGUCAA   667 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 17 (LOC100819941), transcript variant X2, mRNA	squamosa promoter-binding-like protein 17(LOC100819941)	coding protein	psRNATarget
XM_006598954.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1011   GUGCUCUCUAUCUUCUGUCAA   1031 Target Full Sequence	2.5	PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100792071), transcript variant X3, mRNA	teosinte glume architecture 1-like(LOC100792071)	coding protein	psRNATarget
XM_003551373.3	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:855   GUGCUCUCUCUCUUCUGUCAA   875 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100789301), mRNA	squamosa promoter-binding-like protein 9(LOC100789301)	coding protein	psRNATarget
XM_003549082.3	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1069   GUGCUCUCUAUCUUCUGUCAA   1089 Target Full Sequence	2.5	PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100792071), transcript variant X2, mRNA	teosinte glume architecture 1-like(LOC100792071)	coding protein	psRNATarget
XM_003518032.3	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:933   GUGCUCUCUCUCUUCUGUCAA   953 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 17 (LOC100819941), transcript variant X1, mRNA	squamosa promoter-binding-like protein 17(LOC100819941)	coding protein	psRNATarget
XM_006590252.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1187   GUGCUCUCUCUCUUCUGUCAA   1207 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X4, mRNA	squamosa promoter-binding-like protein 12-like(LOC100796013)	coding protein	psRNATarget
XM_006598953.1	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1176   GUGCUCUCUAUCUUCUGUCAA   1196 Target Full Sequence	2.5	PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100792071), transcript variant X1, mRNA	teosinte glume architecture 1-like(LOC100792071)	coding protein	psRNATarget
XM_006590253.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1254   GUGCUCUCUCUCUUCUGUCAA   1274 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X3, mRNA	squamosa promoter-binding-like protein 12-like(LOC100796013)	coding protein	psRNATarget
NM_001255388.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1272   GUGCUCUCUCUCUUCUGUCAA   1292 Target Full Sequence	2.5	Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), mRNA	squamosa promoter-binding-like protein 12-like(LOC100796013)	coding protein	psRNATarget
BT093985.1	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1273   GUGCUCUCUCUCUUCUGUCAA   1293 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-24F23 unknown mRNA	NA	coding protein	psRNATarget
XM_003553380.3	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1154   GUGCUCUCUCUCUUCUGUCAA   1174 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100807165), mRNA	squamosa promoter-binding-like protein 9(LOC100807165)	coding protein	psRNATarget
XM_006590250.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1346   GUGCUCUCUCUCUUCUGUCAA   1366 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X2, mRNA	squamosa promoter-binding-like protein 12-like(LOC100796013)	coding protein	psRNATarget
XM_003520486.3	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1210   GUGCUCUCUCUCUUCUGUCAA   1230 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100780949), transcript variant X2, mRNA	squamosa promoter-binding-like protein 9(LOC100780949)	coding protein	psRNATarget
XM_006590256.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1378   GUGCUCUCUCUCUUCUGUCAA   1398 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X5, mRNA	squamosa promoter-binding-like protein 12-like(LOC100796013)	coding protein	psRNATarget
XM_006576789.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1256   GUGCUCUCUCUCUUCUGUCAA   1276 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100780949), transcript variant X1, mRNA	squamosa promoter-binding-like protein 9(LOC100780949)	coding protein	psRNATarget
XM_006601826.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1317   GUGCUCUCUCUCUUCUGUCAA   1337 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X3, mRNA	squamosa promoter-binding-like protein 12(LOC100781289)	coding protein	psRNATarget
XM_006601825.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1349   GUGCUCUCUCUCUUCUGUCAA   1369 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X2, mRNA	squamosa promoter-binding-like protein 12(LOC100781289)	coding protein	psRNATarget
XM_006601827.1	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1387   GUGCUCUCUCUCUUCUGUCAA   1407 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X1, mRNA	squamosa promoter-binding-like protein 12(LOC100781289)	coding protein	psRNATarget
XM_014771012.1	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1416   GUGCUCUCUCUCUUCUGUCAA   1436 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X4, mRNA	squamosa promoter-binding-like protein 12(LOC100781289)	coding protein	psRNATarget
XM_003553896.3	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1500   GUGCUCUCUAUCUUCUGUCAA   1520 Target Full Sequence	2.5	PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100798317), mRNA	teosinte glume architecture 1-like(LOC100798317)	coding protein	psRNATarget
XM_006590249.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1598   GUGCUCUCUCUCUUCUGUCAA   1618 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X1, mRNA	squamosa promoter-binding-like protein 12-like(LOC100796013)	coding protein	psRNATarget
XM_006601830.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1561   GUGCUCUCUCUCUUCUGUCAA   1581 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X5, mRNA	squamosa promoter-binding-like protein 12(LOC100781289)	coding protein	psRNATarget
XM_006601829.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:1968   GUGCUCUCUCUCUUCUGUCAA   1988 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X6, mRNA	squamosa promoter-binding-like protein 12(LOC100781289)	coding protein	psRNATarget
XM_014773774.1	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||=||*||||||||||| targets:2276   GUGCUCUCUCUCUUCUGUCAA   2296 Target Full Sequence	2.5	PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100780949), transcript variant X3, mRNA	squamosa promoter-binding-like protein 9(LOC100780949)	coding protein	psRNATarget
NM_001249380.1	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   *|||||=||*||||||||||| targets:593   AUGCUCUCUAUCUUCUGUCAA   613 Target Full Sequence	2.5	Glycine max uncharacterized LOC100527199 (LOC100527199), mRNA	uncharacterized LOC100527199(LOC100527199)	coding protein	psRNATarget
BT092024.1	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   *|||||=||*||||||||||| targets:593   AUGCUCUCUAUCUUCUGUCAA   613 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-9K12 unknown mRNA	NA	coding protein	psRNATarget
LQ242597.1	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||*||*||||||||||| targets:70   GUGCUCACUCUCUUCUGUCAA   90 Target Full Sequence	2.5	Sequence 8592 from Patent EP2985353	NA	coding protein	psRNATarget
HI410467.1	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||*||*||||||||||| targets:70   GUGCUCACUCUCUUCUGUCAA   90 Target Full Sequence	2.5	Sequence 8592 from Patent EP2074227	NA	coding protein	psRNATarget
JB170928.1	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   ||||||*||*||||||||||| targets:70   GUGCUCACUCUCUUCUGUCAA   90 Target Full Sequence	2.5	Sequence 8592 from Patent EP2559767	NA	coding protein	psRNATarget
XM_006579745.2	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   *|*||=|=||||||||||||| targets:1391   AUACUUCUUUUCUUCUGUCAA   1411 Target Full Sequence	3.0	PREDICTED: Glycine max peptidyl-prolyl cis-trans isomerase CYP40-like (LOC100803839), transcript variant X1, mRNA	peptidyl-prolyl cis-trans isomerase CYP40-like(LOC100803839)	coding protein	psRNATarget
XM_003524534.3	ncRNA:21   CACGAGGGAAAGAAGACAGUU   1   *|*||=|=||||||||||||| targets:1381   AUACUUCUUUUCUUCUGUCAA   1401 Target Full Sequence	3.0	PREDICTED: Glycine max peptidyl-prolyl cis-trans isomerase CYP40-like (LOC100803839), transcript variant X2, mRNA	peptidyl-prolyl cis-trans isomerase CYP40-like(LOC100803839)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).