ncRNA ID | ath-miR5635c |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:13316754-13316927 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 21 - UGUUAAGGAGUGUUAACGGUG - 41 |
Stem-loop(if miRNA) |
U      A                     A             U           AUAA   ACAACUGUUUUCGUCCUUAAACCAA  UGACCC GCCAAAUCGACUCACCGUUAA ACUUCUUAACAGC CUCCUAACAGC    CUA                         C  |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    |||                         G  ACUGGG CGGUUUAGCUGAGUGGCAAUU UGAGGAAUUGUCG GAGGAUUGUCG    CAA                         A A      C                     G             C           ---G   UGUUUUGUACCGGAUUGUCGACAAU |
Stem-loop sequence | UUGACCCAGCCAAAUCGACUCACCGUUAAAACUUCUUAACAGCUCUCCUAACAGCAUAACUAACAACUGUUUUCGUCCUUAAACCAACGAUAACAGCUGUUAGGCCAUGUUUUGUAACGGCUGUUAGGAGCGCUGUUAAGGAGUGUUAACGGUGAGUCGAUUUGGCCGGGUCAA |
1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |