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BaseInfo

ncRNA ID ath-miR5635c
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:13316754-13316927 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 21 - UGUUAAGGAGUGUUAACGGUG - 41
Stem-loop(if miRNA) U      A                     A             U           AUAA   ACAACUGUUUUCGUCCUUAAACCAA
 UGACCC GCCAAAUCGACUCACCGUUAA ACUUCUUAACAGC CUCCUAACAGC    CUA                         C
 |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    |||                         G
 ACUGGG CGGUUUAGCUGAGUGGCAAUU UGAGGAAUUGUCG GAGGAUUGUCG    CAA                         A
A      C                     G             C           ---G   UGUUUUGUACCGGAUUGUCGACAAU
Stem-loop sequence UUGACCCAGCCAAAUCGACUCACCGUUAAAACUUCUUAACAGCUCUCCUAACAGCAUAACUAACAACUGUUUUCGUCCUUAAACCAACGAUAACAGCUGUUAGGCCAUGUUUUGUAACGGCUGUUAGGAGCGCUGUUAAGGAGUGUUAACGGUGAGUCGAUUUGGCCGGGUCAA

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).