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BaseInfo

ncRNA ID	gma-miR4993
Species	Glycine max
Class	miRNA
Genome position	chr1:27756163-27756232 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	41 - GAGCGGCGGCGGUGGAGGAUG - 61
Stem-loop(if miRNA)	-GG  -GC    A    C   G  G     --U  UC    CG   GAUG GCGG GGC GU GAGGA   GA  C    ||   |||| |||| ||| || |||||   ||    GU   UUAC CGUC UUG UA CUUCU   CU  C GAA  AGU    -    -   G  G     UCU  UU
Stem-loop sequence	GGCGGCGAUGAGCGGCGGCGGUGGAGGAUGAUCCCUUUCUCUUCUUCGAUGGUUCUGCCAUUUGAUGAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003543011.3	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   *|||||||||||||||||||* targets:217   AAUCCUCCACCGCCGCCGCUG   237 Target Full Sequence	1.0	PREDICTED: Glycine max acetolactate synthase 2, chloroplastic (LOC100812402), mRNA	acetolactate synthase 2, chloroplastic(LOC100812402)	coding protein	psRNATarget
AK286772.1	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   *|||||||||||||||||||* targets:175   AAUCCUCCACCGCCGCCGCUG   195 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-36-H16	NA	coding protein	psRNATarget
AK245422.1	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   *|||||||||||||||||||* targets:175   AAUCCUCCACCGCCGCCGCUG   195 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-30-A21	NA	coding protein	psRNATarget
FJ581423.1	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   *|||||||||||||||||||* targets:158   AAUCCUCCACCGCCGCCGCUG   178 Target Full Sequence	1.0	Glycine max acetohydroxyacid synthase mRNA, partial cds	NA	coding protein	psRNATarget
XM_014764563.1	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   **|||||||||||||*||||| targets:984   GCUCCUCCACCGCCGACGCUC   1004 Target Full Sequence	1.5	PREDICTED: Glycine max phototropin-1-like (LOC100804524), transcript variant X2, mRNA	phototropin-1-like(LOC100804524)	coding protein	psRNATarget
XM_006592184.2	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   **|||||||||||||*||||| targets:852   GCUCCUCCACCGCCGACGCUC   872 Target Full Sequence	1.5	PREDICTED: Glycine max phototropin-1-like (LOC100804524), transcript variant X1, mRNA	phototropin-1-like(LOC100804524)	coding protein	psRNATarget
XM_006592186.2	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   **|||||||||||||*||||| targets:624   GCUCCUCCACCGCCGACGCUC   644 Target Full Sequence	1.5	PREDICTED: Glycine max phototropin-1-like (LOC100804524), transcript variant X5, mRNA	phototropin-1-like(LOC100804524)	coding protein	psRNATarget
XM_006592185.2	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   **|||||||||||||*||||| targets:620   GCUCCUCCACCGCCGACGCUC   640 Target Full Sequence	1.5	PREDICTED: Glycine max phototropin-1-like (LOC100804524), transcript variant X3, mRNA	phototropin-1-like(LOC100804524)	coding protein	psRNATarget
XM_003539698.3	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   **|||||||||||||*||||| targets:526   GCUCCUCCACCGCCGACGCUC   546 Target Full Sequence	1.5	PREDICTED: Glycine max phototropin-1-like (LOC100804524), transcript variant X4, mRNA	phototropin-1-like(LOC100804524)	coding protein	psRNATarget
XM_014767089.1	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   |*|||||||||||||||||** targets:1481   CCUCCUCCACCGCCGCCGCAG   1501 Target Full Sequence	2.5	PREDICTED: Glycine max formin-like protein 2 (LOC100815532), mRNA	formin-like protein 2(LOC100815532)	coding protein	psRNATarget
XM_003544942.3	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   |*|||*||=|||||||||||| targets:444   CCUCCGCCGCCGCCGCCGCUC   464 Target Full Sequence	2.5	PREDICTED: Glycine max nucleolar complex protein 4 homolog (LOC100804223), mRNA	nucleolar complex protein 4 homolog(LOC100804223)	coding protein	psRNATarget
XM_006589696.2	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   |*|||||||||||||||*||* targets:1447   CUUCCUCCACCGCCGCCACUA   1467 Target Full Sequence	2.5	PREDICTED: Glycine max leukocyte receptor cluster member 8 homolog (LOC100778996), transcript variant X1, mRNA	leukocyte receptor cluster member 8 homolog(LOC100778996)	coding protein	psRNATarget
XM_006589692.2	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   |*|||||||||||||||*||* targets:1448   CUUCCUCCACCGCCGCCACUA   1468 Target Full Sequence	2.5	PREDICTED: Glycine max leukocyte receptor cluster member 8 homolog (LOC100778996), transcript variant X2, mRNA	leukocyte receptor cluster member 8 homolog(LOC100778996)	coding protein	psRNATarget
XM_006583817.2	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   =*|||*||=|||||||||||| targets:158   UCUCCGCCGCCGCCGCCGCUC   178 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100806882 (LOC100806882), transcript variant X1, mRNA	uncharacterized LOC100806882(LOC100806882)	coding protein	psRNATarget
XM_014778153.1	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   =*|||*||=|||||||||||| targets:170   UCUCCGCCGCCGCCGCCGCUC   190 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100806882 (LOC100806882), transcript variant X2, mRNA	uncharacterized LOC100806882(LOC100806882)	coding protein	psRNATarget
XM_006589695.2	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   |*|||||||||||||||*||* targets:872   CUUCCUCCACCGCCGCCACUA   892 Target Full Sequence	2.5	PREDICTED: Glycine max leukocyte receptor cluster member 8 homolog (LOC100778996), transcript variant X3, mRNA	leukocyte receptor cluster member 8 homolog(LOC100778996)	coding protein	psRNATarget
XM_006589697.2	ncRNA:21   GUAGGAGGUGGCGGCGGCGAG   1   |*|||||||||||||||*||* targets:686   CUUCCUCCACCGCCGCCACUA   706 Target Full Sequence	2.5	PREDICTED: Glycine max leukocyte receptor cluster member 8 homolog (LOC100778996), transcript variant X4, mRNA	leukocyte receptor cluster member 8 homolog(LOC100778996)	coding protein	psRNATarget

Reference

1	PMID:21504877 "MicroRNAs in the shoot apical meristem of soybean"; Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL; J Exp Bot. 62:2495-2506(2011).