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BaseInfo

ncRNA ID	gma-miR5670a
Species	Glycine max
Class	miRNA
Genome position	chr1:6388103-6388238 [+]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	105 - CAUCAUACCAUAUUUGCUUCAU - 126
Stem-loop(if miRNA)	U  G      C     A                            A     CAAA      C  UUA  UG AGUUUC AUGAA CAAAUAUGGUAUGAUGUAAGGGAAACAU AAAAC    GUUAGU GA   U  || |||||| ||||| |||||||||||||||||||||||||||| |||||    |||||| ||   A  AC UCAAAG UACUU GUUUAUACCAUACUACAUUUCCUUUGUA UUUUG    CAAUCA CU   G -  A      A     C                            G     ACUA      A  UGG
Stem-loop sequence	UUGGAGUUUCCAUGAAACAAAUAUGGUAUGAUGUAAGGGAAACAUAAAAACCAAAGUUAGUCGAUUAUAGGGUUCAACUAACAUCAGUUUUGAUGUUUCCUUUACAUCAUACCAUAUUUGCUUCAUAGAAACUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014769243.1	ncRNA:22   UACUUCGUUUAUACCAUACUAC   1   *|*||||||||||||||||||| targets:849   CUAAAGCAAAUAUGGUAUGAUG   870 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC100806062 (LOC100806062), transcript variant X1, mRNA	uncharacterized LOC100806062(LOC100806062)	coding protein	psRNATarget
XM_014769245.1	ncRNA:22   UACUUCGUUUAUACCAUACUAC   1   *|*||||||||||||||||||| targets:849   CUAAAGCAAAUAUGGUAUGAUG   870 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC100806062 (LOC100806062), transcript variant X2, mRNA	uncharacterized LOC100806062(LOC100806062)	coding protein	psRNATarget
XM_014764097.1	ncRNA:22   UACUUCGUUUAUACCAUACUAC   1   =**|||||=||*|||||||||| targets:988   GCUAAGCAGAUUUGGUAUGAUG   1009 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100818931 (LOC100818931), transcript variant X5, mRNA	uncharacterized LOC100818931(LOC100818931)	coding protein	psRNATarget
XM_014764096.1	ncRNA:22   UACUUCGUUUAUACCAUACUAC   1   =**|||||=||*|||||||||| targets:991   GCUAAGCAGAUUUGGUAUGAUG   1012 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100818931 (LOC100818931), transcript variant X4, mRNA	uncharacterized LOC100818931(LOC100818931)	coding protein	psRNATarget
XM_006591167.2	ncRNA:22   UACUUCGUUUAUACCAUACUAC   1   =**|||||=||*|||||||||| targets:990   GCUAAGCAGAUUUGGUAUGAUG   1011 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100818931 (LOC100818931), transcript variant X1, mRNA	uncharacterized LOC100818931(LOC100818931)	coding protein	psRNATarget
XM_006591166.2	ncRNA:22   UACUUCGUUUAUACCAUACUAC   1   =**|||||=||*|||||||||| targets:1020   GCUAAGCAGAUUUGGUAUGAUG   1041 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100818931 (LOC100818931), transcript variant X2, mRNA	uncharacterized LOC100818931(LOC100818931)	coding protein	psRNATarget
XM_014764095.1	ncRNA:22   UACUUCGUUUAUACCAUACUAC   1   =**|||||=||*|||||||||| targets:1043   GCUAAGCAGAUUUGGUAUGAUG   1064 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100818931 (LOC100818931), transcript variant X3, mRNA	uncharacterized LOC100818931(LOC100818931)	coding protein	psRNATarget
XM_006591162.2	ncRNA:22   UACUUCGUUUAUACCAUACUAC   1   =**|||||=||*|||||||||| targets:979   GCUAAGCAGAUUUGGUAUGAUG   1000 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100814680 (LOC100814680), transcript variant X2, mRNA	uncharacterized LOC100814680(LOC100814680)	coding protein	psRNATarget
XM_006591161.2	ncRNA:22   UACUUCGUUUAUACCAUACUAC   1   =**|||||=||*|||||||||| targets:979   GCUAAGCAGAUUUGGUAUGAUG   1000 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100814680 (LOC100814680), transcript variant X1, mRNA	uncharacterized LOC100814680(LOC100814680)	coding protein	psRNATarget

Reference

1	PMID:21219599 "Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing"; Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS; BMC Plant Biol. 11:5(2011).