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BaseInfo

ncRNA ID	gma-miR395a
Species	Glycine max
Class	miRNA
Genome position	chr1:4818581-4818690 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	76 - CUGAAGUGUUUGGGGGAACUC - 96
Stem-loop(if miRNA)	U UC  UA         UG        AUUAAA   CUUUAUUAUCAUAUA UCAGGU U  CC  GAGUUCCCC  AACGCUUC      GGG               G |||||| |  ||  |||||||||  ||||||||      ||| AGUUCA A  GG  CUCAAGGGG  UUGUGAAG      UCA               U       U GU  CC         GU        ------   UACCUGAUUGAACCC
Stem-loop sequence	UCAGGUUUUCCCUAGAGUUCCCCUGAACGCUUCAUUAAAGGGCUUUAUUAUCAUAUAGUCCCAAGUUAGUCCAUACUGAAGUGUUUGGGGGAACUCCCGGUGAUACUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003543724.3	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||*|||||||||||||| targets:330   AAGUUCACCCAAACACUUCAG   350 Target Full Sequence	1.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100798723), mRNA	low affinity sulfate transporter 3-like(LOC100798723)	coding protein	psRNATarget
XM_003531315.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   ||||||=|||||||||||||* targets:145   GAGUUCUCCCAAACACUUCAA   165 Target Full Sequence	2.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100775538), mRNA	sulfate transporter 2.1-like(LOC100775538)	coding protein	psRNATarget
XM_014770651.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:215   AAGUUCUCCCAAACACUUCAA   235 Target Full Sequence	2.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100814993), mRNA	sulfate transporter 2.1-like(LOC100814993)	coding protein	psRNATarget
XM_003552772.3	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:108   AAGUUCUCCCAAACACUUCAA   128 Target Full Sequence	2.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100817831), mRNA	sulfate transporter 2.1-like(LOC100817831)	coding protein	psRNATarget
XM_003538469.3	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||=|||||||||||||* targets:148   AAGUUCUCCCAAACACUUCAA   168 Target Full Sequence	2.0	PREDICTED: Glycine max sulfate transporter 2.1-like (LOC100781327), mRNA	sulfate transporter 2.1-like(LOC100781327)	coding protein	psRNATarget
XM_014767214.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||*|||||||||||||* targets:515   AAGUUCACCCAAACACUUCAA   535 Target Full Sequence	2.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X3, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
XM_006596268.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||*|||||||||||||* targets:516   AAGUUCACCCAAACACUUCAA   536 Target Full Sequence	2.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X2, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
XM_006596269.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||*|||||||||||||* targets:519   AAGUUCACCCAAACACUUCAA   539 Target Full Sequence	2.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X4, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
XM_003544137.3	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   *|||||*|||||||||||||* targets:507   AAGUUCACCCAAACACUUCAA   527 Target Full Sequence	2.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100776591), transcript variant X1, mRNA	low affinity sulfate transporter 3-like(LOC100776591)	coding protein	psRNATarget
XM_003526548.3	ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1   ||||||**||||||||||||* targets:259   GAGUUCAACCAAACACUUCAA   279 Target Full Sequence	3.0	PREDICTED: Glycine max low affinity sulfate transporter 3-like (LOC100805269), mRNA	low affinity sulfate transporter 3-like(LOC100805269)	coding protein	psRNATarget

Reference

1

PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).