| ncRNA ID | ath-miR319a |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr4:12352956-12353131 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 154 - UUGGACUGAAGGGAGCUCCCU - 174 |
| Stem-loop(if miRNA) |
A G U C UC G U A - U AC C AA C GCCAAAA AGAG GAGCUUCCUU AGUCCA UCA AGG GU A AUGAUUCAAUU G CU CCG UCAUUCAU CA UA CGAGUC U |||| |||||||||| |||||| ||| ||| || | ||||||||||| | || ||| |||||||| || || |||||| UCUC CUCGAGGGAA UCAGGU AGU UCU UA U UACUAGGUUAA C GA GGC AGUAAGUA GU AU GCUCAG U C G U U CU G - A A U GU A AA U AUCAAAC |
| Stem-loop sequence | AGAGAGAGCUUCCUUGAGUCCAUUCACAGGUCGUGAUAUGAUUCAAUUAGCUUCCGACUCAUUCAUCCAAAUACCGAGUCGCCAAAAUUCAAACUAGACUCGUUAAAUGAAUGAAUGAUGCGGUAGACAAAUUGGAUCAUUGAUUCUCUUUGAUUGGACUGAAGGGAGCUCCCUCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_128252.6 |
|
1.5 | Arabidopsis thaliana myb domain protein 104 (MYB104), partial mRNA | myb domain protein 104(MYB104) | coding protein | psRNATarget |
| 1 | PMID:12931144
"Control of leaf morphogenesis by microRNAs"; Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D; Nature. 425:257-263(2003). |
| 2 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 3 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 4 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 5 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |