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BaseInfo

ncRNA ID	ath-miR845a
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr4:12217406-12217568 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	52 - CGGCUCUGAUACCAAUUGAUG - 72
Stem-loop(if miRNA)	-------AGAU      UU     AUU  --U    AGUUCC    CUGC        CA         C          A   CU  G            AAGGGA  GCACG   UC   CAAU      GUCG    GUUUCCAU  CGUCGAUUG UGUCAGAGCC CGC  AU A            ||||||  |||||   ||   ||||      ||||    ||||||||  ||||||||| |||||||||| |||  || A            UUUCCU  UGUGC   AG   GUUA      UAGC    CAAAGGUA  GUAGUUAAC AUAGUCUCGG GUG  UA G UGUUGUUCCAU      -U     CUU  UCC    ------    --UA        UC         C          C   UU  A
Stem-loop sequence	AGAUAAGGGAUUGCACGAUUUCUCAAUAGUUCCGUCGCUGCGUUUCCAUCACGUCGAUUGCUGUCAGAGCCACGCCUAUGAAGAAUUUGUGCGGCUCUGAUACCAAUUGAUGCUAUGGAAACAUCGAUAUUGCCUGAUUCCGUGUUUCCUUUUACCUUGUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY168992.1	ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1   =||||=*|||||||||||||* targets:565   UAUCAGAUGGUAUCAGAGCCU   585 Target Full Sequence	3.0	Arabidopsis thaliana hypothetical protein (T17H1.21) mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
2	PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007).