| ncRNA ID | ath-miR5017-3p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr4:11962901-11963078 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 60 - UUAUACCAAAUUAAUAGCAAA - 80 |
| Stem-loop(if miRNA) |
-- AA -C C A A A --UU C G A C A AAA GGUU UGCUU CA GGC UUAA ACUA UAU GUAC UUUAU UUCUU AAA UUUGUUA UAAUUUGG AUGAAUUAGCU U |||| ||||| || ||| |||| |||| ||| |||| ||||| ||||| ||| ||||||| |||||||| ||||||||||| G CCGA ACGAA GU CCG AAUU UGAU AUA CAUG AAGUA AAGAA UUU AAACGAU AUUAAACC UAUUUAAUCGA G GU AC AU A G C A UAAC C G G A A AUC |
| Stem-loop sequence | GGUUUGCUUAACACGGCCUUAAAACUAAUAUAGUACUUUUUAUCUUCUUGAAAAUUUGUUACUAAUUUGGAAUGAAUUAGCUAAAUGGCUAAGCUAAUUUAUACCAAAUUAAUAGCAAAGUUUGAAGAACAUGAACAAUGUACAAUACUAGUGUUAAAGCCUAUGCAAAGCAUGAGCC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_118405.3 |
|
0.0 | Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein mRNA | Tetratricopeptide repeat (TPR)-like superfamily protein(AT4G22760) | coding protein | psRNATarget |
| 1 | PMID:21357774
"MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011). |