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BaseInfo

ncRNA ID ath-miR169g-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:11482879-11483257 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 156 - UCCGGCAAGUUGACCUUGGCU - 176
Stem-loop(if miRNA) UGCCUAUAAAUACCUUCAUCACGA   -U       -  AC   A -   AAAAGAAAGGUAGAGAAAACAUGAUAAUGAUGAUUACGAUGAUGAGAGUCUCUAGUUGUAUCAGAGGGUCUUGCAUGGAAGAAUAGAGAAUGAGGUUGAGCCAAGGAUGACUUGCCGGGUUUUUUUACCAAUGAAUCUAAUUAACUGAUUCU
                        GUA  GACAAGA UC  AAG C AAG                                                                                                                                                        G
                        |||  ||||||| ||  ||| | |||                                                                                                                                                        G
                        CGU  UUGUUUU AG  CUA G AAG                                                                                                                                                        U
-----------------------A   UU       U  -A   - U   UUUAGCUUUUUGGCAUUCGGUUUUUUAAGCGUAGUUCUUUUUGUGUAAAGUUACUUUAAUGUUUCAAACUAGUGCUAAGUACUACUAUCUAUAGAACCUCAGACUGUAGGUUUUCUUCUCUUCCUUUGUCUCGGUUCCAGUUGAACGGCCUG
Stem-loop sequence UGCCUAUAAAUACCUUCAUCACGAGUAUGACAAGAUCACAAGACAAGAAAAGAAAGGUAGAGAAAACAUGAUAAUGAUGAUUACGAUGAUGAGAGUCUCUAGUUGUAUCAGAGGGUCUUGCAUGGAAGAAUAGAGAAUGAGGUUGAGCCAAGGAUGACUUGCCGGGUUUUUUUACCAAUGAAUCUAAUUAACUGAUUCUGGUGUCCGGCAAGUUGACCUUGGCUCUGUUUCCUUCUCUUCUUUUGGAUGUCAGACUCCAAGAUAUCUAUCAUCAUGAAUCGUGAUCAAACUUUGUAAUUUCAUUGAAAUGUGUUUUUCUUGAUGCGAAUUUUUUGGCUUACGGUUUUUCGAUUUGAAUGAUCAGAUUUUUGUUUUUGCA

Reference

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"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
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2 PMID:15345049
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4 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
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5 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
6 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
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J Exp Bot. 61:165-177(2010).