ncRNA ID | ath-miR169g-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:11482879-11483257 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 156 - UCCGGCAAGUUGACCUUGGCU - 176 |
Stem-loop(if miRNA) |
UGCCUAUAAAUACCUUCAUCACGA   -U       -  AC   A -   AAAAGAAAGGUAGAGAAAACAUGAUAAUGAUGAUUACGAUGAUGAGAGUCUCUAGUUGUAUCAGAGGGUCUUGCAUGGAAGAAUAGAGAAUGAGGUUGAGCCAAGGAUGACUUGCCGGGUUUUUUUACCAAUGAAUCUAAUUAACUGAUUCU                         GUA  GACAAGA UC  AAG C AAG                                                                                                                                                        G                         |||  ||||||| ||  ||| | |||                                                                                                                                                        G                         CGU  UUGUUUU AG  CUA G AAG                                                                                                                                                        U -----------------------A   UU       U  -A   - U   UUUAGCUUUUUGGCAUUCGGUUUUUUAAGCGUAGUUCUUUUUGUGUAAAGUUACUUUAAUGUUUCAAACUAGUGCUAAGUACUACUAUCUAUAGAACCUCAGACUGUAGGUUUUCUUCUCUUCCUUUGUCUCGGUUCCAGUUGAACGGCCUG |
Stem-loop sequence | UGCCUAUAAAUACCUUCAUCACGAGUAUGACAAGAUCACAAGACAAGAAAAGAAAGGUAGAGAAAACAUGAUAAUGAUGAUUACGAUGAUGAGAGUCUCUAGUUGUAUCAGAGGGUCUUGCAUGGAAGAAUAGAGAAUGAGGUUGAGCCAAGGAUGACUUGCCGGGUUUUUUUACCAAUGAAUCUAAUUAACUGAUUCUGGUGUCCGGCAAGUUGACCUUGGCUCUGUUUCCUUCUCUUCUUUUGGAUGUCAGACUCCAAGAUAUCUAUCAUCAUGAAUCGUGAUCAAACUUUGUAAUUUCAUUGAAAUGUGUUUUUCUUGAUGCGAAUUUUUUGGCUUACGGUUUUUCGAUUUGAAUGAUCAGAUUUUUGUUUUUGCA |
1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
2 | PMID:15345049
"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"; Wang XJ, Reyes JL, Chua NH, Gaasterland T; Genome Biol. 5:R65(2004). |
3 | PMID:16040653
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4 | PMID:16954541
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5 | PMID:17182867
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6 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |