| ncRNA ID | ath-miR169g-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr4:11482879-11483257 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 216 - UGAGCCAAGGAUGACUUGCCG - 236 |
| Stem-loop(if miRNA) |
UGCCUAUAAAUACCUUCAUCACGA -U - AC A - AAAAGAAAGGUAGAGAAAACAUGAUAAUGAUGAUUACGAUGAUGAGAGUCUCUAGUUGUAUCAGAGGGUCUUGCAUGGAAGAAUAGAGAAUGAGGUUGAGCCAAGGAUGACUUGCCGGGUUUUUUUACCAAUGAAUCUAAUUAACUGAUUCU GUA GACAAGA UC AAG C AAG G ||| ||||||| || ||| | ||| G CGU UUGUUUU AG CUA G AAG U -----------------------A UU U -A - U UUUAGCUUUUUGGCAUUCGGUUUUUUAAGCGUAGUUCUUUUUGUGUAAAGUUACUUUAAUGUUUCAAACUAGUGCUAAGUACUACUAUCUAUAGAACCUCAGACUGUAGGUUUUCUUCUCUUCCUUUGUCUCGGUUCCAGUUGAACGGCCUG |
| Stem-loop sequence | UGCCUAUAAAUACCUUCAUCACGAGUAUGACAAGAUCACAAGACAAGAAAAGAAAGGUAGAGAAAACAUGAUAAUGAUGAUUACGAUGAUGAGAGUCUCUAGUUGUAUCAGAGGGUCUUGCAUGGAAGAAUAGAGAAUGAGGUUGAGCCAAGGAUGACUUGCCGGGUUUUUUUACCAAUGAAUCUAAUUAACUGAUUCUGGUGUCCGGCAAGUUGACCUUGGCUCUGUUUCCUUCUCUUCUUUUGGAUGUCAGACUCCAAGAUAUCUAUCAUCAUGAAUCGUGAUCAAACUUUGUAAUUUCAUUGAAAUGUGUUUUUCUUGAUGCGAAUUUUUUGGCUUACGGUUUUUCGAUUUGAAUGAUCAGAUUUUUGUUUUUGCA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_001342883.1 |
|
2.5 | Arabidopsis thaliana nuclear factor Y, subunit A10 (NF-YA10), mRNA | nuclear factor Y, subunit A10(NF-YA10) | coding protein | psRNATarget | |||||||||
| AY084643.1 |
|
2.5 | Arabidopsis thaliana clone 114015 mRNA, complete sequence | NA | coding protein | psRNATarget | |||||||||
| BX832331.1 |
|
2.5 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH66ZB09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| BX824345.1 |
|
2.5 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH41ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| Y13721.1 |
|
2.5 | Arabidopsis thaliana mRNA for Hap2b transcription factor | NA | coding protein | psRNATarget | |||||||||
| BX829562.1 |
|
2.5 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZC09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| BX822535.1 |
|
2.5 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB46ZH10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| AK228089.1 |
|
2.5 | Arabidopsis thaliana mRNA for putative transcription factor, complete cds, clone: RAFL14-57-G15 | NA | coding protein | psRNATarget | |||||||||
| NM_120734.4 |
|
2.5 | Arabidopsis thaliana nuclear factor Y, subunit A10 (NF-YA10), mRNA | nuclear factor Y, subunit A10(NF-YA10) | coding protein | psRNATarget | |||||||||
| NM_203013.3 |
|
2.5 | Arabidopsis thaliana nuclear factor Y, subunit A10 (NF-YA10), mRNA | nuclear factor Y, subunit A10(NF-YA10) | coding protein | psRNATarget | |||||||||
| NM_001342882.1 |
|
2.5 | Arabidopsis thaliana nuclear factor Y, subunit A10 (NF-YA10), mRNA | nuclear factor Y, subunit A10(NF-YA10) | coding protein | psRNATarget | |||||||||
| NM_001342881.1 |
|
2.5 | Arabidopsis thaliana nuclear factor Y, subunit A10 (NF-YA10), mRNA | nuclear factor Y, subunit A10(NF-YA10) | coding protein | psRNATarget | |||||||||
| NM_203012.1 |
|
2.5 | Arabidopsis thaliana nuclear factor Y, subunit A10 (NF-YA10), mRNA | nuclear factor Y, subunit A10(NF-YA10) | coding protein | psRNATarget | |||||||||
| NM_111443.4 |
|
2.5 | Arabidopsis thaliana nuclear factor Y, subunit A2 (NF-YA2), mRNA | nuclear factor Y, subunit A2(NF-YA2) | coding protein | psRNATarget | |||||||||
| NM_001342880.1 |
|
2.5 | Arabidopsis thaliana nuclear factor Y, subunit A10 (NF-YA10), mRNA | nuclear factor Y, subunit A10(NF-YA10) | coding protein | psRNATarget | |||||||||
| NM_001337602.1 |
|
2.5 | Arabidopsis thaliana nuclear factor Y, subunit A2 (NF-YA2), mRNA | nuclear factor Y, subunit A2(NF-YA2) | coding protein | psRNATarget | |||||||||
| NM_001338098.1 |
|
2.5 | Arabidopsis thaliana nuclear factor Y, subunit A6 (NF-YA6), mRNA | nuclear factor Y, subunit A6(NF-YA6) | coding protein | psRNATarget | |||||||||
| NM_112256.3 |
|
2.5 | Arabidopsis thaliana nuclear factor Y, subunit A6 (NF-YA6), mRNA | nuclear factor Y, subunit A6(NF-YA6) | coding protein | psRNATarget |
| 1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
| 2 | PMID:15345049
"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"; Wang XJ, Reyes JL, Chua NH, Gaasterland T; Genome Biol. 5:R65(2004). |
| 3 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 4 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 5 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 6 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |